View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20146_low_44 (Length: 240)
Name: NF20146_low_44
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 47461993 - 47462225
Alignment:
| Q |
1 |
atatggatattggatggttgtaaaagtttagaaagaagactatataagcaagtctaggaaaactaagccggaaaatctcagcctttattatttaataatt |
100 |
Q |
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| T |
47461993 |
atatggatattggatggttgtaaaagtttagaaagaagactatataagcaagtctaggaaaactaagccggaaaatctcagcctttattatttaataatt |
47462092 |
T |
|
| Q |
101 |
attttcaaaaagttattcctcatcttcttctgcattcttttggaaaagctctgatctcaaaaaatgaaggaaatatgattaaaacataggtgaggtttaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47462093 |
attttcaaaaagttattcctcatcttcttctgcattc-tttggaaaacctctgatctcaaaaaatgaaggaaatatgattaaaacataggtgagatttag |
47462191 |
T |
|
| Q |
201 |
catgggaaagtcttgtgactttcctagcgtggat |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
47462192 |
catgggaaagtcttgtgactttcctagcgtggat |
47462225 |
T |
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