View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20146_low_5 (Length: 636)
Name: NF20146_low_5
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 62 - 586
Target Start/End: Complemental strand, 45342084 - 45341562
Alignment:
| Q |
62 |
atgattgaatcgttgtttcagtgtagtggtgttgttatgctattttttcggttatgtgcgtatgtatgtttgttgaatcgtatattgaacatttgtttgt |
161 |
Q |
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| T |
45342084 |
atgattgaatcgttgtttcagtgtagtggtgttgttatgctattttttcggttatgtgcgtatgtatgtttgttgaatcgtatattgaacatttgtttgt |
45341985 |
T |
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| Q |
162 |
ttttgtcgttatgcgtaccgttactacaggattgggatttggtggtggtggtggggctcgtactggaacgttgatgtctttgtcgtatttgttggggttt |
261 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45341984 |
ttttgtcgttatgcgtaccgttattacaggattgggatttggtggtggtggtggggctcgtactggaacgttgatgtctttgtcgtatttgttggggttt |
45341885 |
T |
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| Q |
262 |
gaggaagaaggtnnnnnnnnnnnnnnnnnn---tacacactcattcatacacctcatcgtaaacttcttcctcattctggtaatttttactttccttagc |
358 |
Q |
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| T |
45341884 |
gaggaagaaggtatcgacaacaacaacaacaactacacactcattcatacacctcatcgtaaacttcttcctcattctggtaatttttactttcctt--- |
45341788 |
T |
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| Q |
359 |
ttgtttaattctagtaccttttaaacttaatcattacaaatttgtttgtatttattcattaaatttggaagaatgattatttttgttttctagagatttg |
458 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
45341787 |
--gtttaattctagtaccttttaaacttaatcattacaaatttgtttgtatttattcattaaatttgggagaatgattatttttcttttctagagatttg |
45341690 |
T |
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| Q |
459 |
tcttttccttgaatctgtgtgttcattttgctgattaagaaatttatttattcaatattcatgagtgtattaatttgttgttatagttcatttctgtgtg |
558 |
Q |
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| T |
45341689 |
tctttttcttgaatctgtgtgttcattttgctgattaagaaatttatttattcaatattcatgagtgtattaatttgttgttatagttaatttccgtgtg |
45341590 |
T |
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| Q |
559 |
acctttcacacatcttttgaacaattga |
586 |
Q |
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| T |
45341589 |
acctttcacacatcttttgaacaattga |
45341562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 45342169 - 45342116
Alignment:
| Q |
14 |
ttctctttccaaaaatcactgttaatttgtagattcattgctattgctatgatt |
67 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45342169 |
ttctctttccaaaaatcactgttaatttgtagattcattgctattgctatgatt |
45342116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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