View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20146_low_51 (Length: 227)
Name: NF20146_low_51
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_low_51 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 47461793 - 47462013
Alignment:
| Q |
7 |
atatttccaatagaaacaatttaatttgtattagtgaataacgtaactgaacaagtgtcggtgtttgtttgcaggtgcaagtttgagttttgctattctt |
106 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47461793 |
atatttgcaatagaaacaatttaatttgtattagtgaataacgtaactgaacaagtgtcggtgtttgtttgcaggtgcaagtttgagttttgctattctt |
47461892 |
T |
|
| Q |
107 |
gcggagcacaatggacatcttctcatggtggttgtcaaagaaattagatttaagaaaacatgatgattcatatagatgggttgtggttgtggttattttg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47461893 |
gcggagcacaatggacatcttctcatggtggttgtcaaagaaattagatttaagaaaagatgatgattcatatagatgggttgtggttgtggttattttg |
47461992 |
T |
|
| Q |
207 |
atatggatattggatggttgt |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
47461993 |
atatggatattggatggttgt |
47462013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 47468797 - 47468886
Alignment:
| Q |
66 |
ggtgtttgtttgcaggtgcaagtttgagttttgctattcttgcggagcacaatggacatcttctcatggtggttgtcaaagaaattagat |
155 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| | || || ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47468797 |
ggtgtttgtttgcaggtgcaaatttgagttttgctatgcgtgtggtgcaggatggacatcttctcatggtggttgtcaaagaaattagat |
47468886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 66 - 152
Target Start/End: Original strand, 47464682 - 47464768
Alignment:
| Q |
66 |
ggtgtttgtttgcaggtgcaagtttgagttttgctattcttgcggagcacaatggacatcttctcatggtggttgtcaaagaaatta |
152 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||| || |||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
47464682 |
ggtgtttgtttgcaggtgcaaatttcagttttgctatgctcgcggagcacaatcaacatcttctcaccgtggttgtcaaagaaatta |
47464768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 66 - 140
Target Start/End: Original strand, 47456058 - 47456132
Alignment:
| Q |
66 |
ggtgtttgtttgcaggtgcaagtttgagttttgctattcttgcggagcacaatggacatcttctcatggtggttg |
140 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||| |||| ||||||||| ||| ||||||||||||| |
|
|
| T |
47456058 |
ggtgtttgtttgcaggtgccggtttgagttttgctatgcttgtggagaacaatggacttctactcatggtggttg |
47456132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University