View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20146_low_58 (Length: 214)

Name: NF20146_low_58
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20146_low_58
NF20146_low_58
[»] chr3 (2 HSPs)
chr3 (16-105)||(39992029-39992118)
chr3 (164-214)||(39992177-39992227)
[»] chr4 (2 HSPs)
chr4 (16-84)||(11039210-11039278)
chr4 (164-214)||(11038902-11038952)
[»] chr2 (3 HSPs)
chr2 (16-84)||(7190656-7190724)
chr2 (16-84)||(13809939-13810007)
chr2 (164-214)||(13810267-13810317)
[»] chr1 (5 HSPs)
chr1 (16-84)||(2939275-2939343)
chr1 (16-82)||(33332698-33332764)
chr1 (16-84)||(46015214-46015282)
chr1 (164-214)||(46015541-46015591)
chr1 (165-209)||(2938910-2938954)
[»] chr8 (6 HSPs)
chr8 (18-84)||(9311654-9311720)
chr8 (16-84)||(14817323-14817391)
chr8 (16-84)||(14828348-14828416)
chr8 (167-214)||(14816891-14816938)
chr8 (167-214)||(14828802-14828849)
chr8 (164-214)||(9311346-9311396)
[»] chr7 (1 HSPs)
chr7 (16-82)||(45087730-45087796)
[»] chr5 (2 HSPs)
chr5 (16-84)||(19718358-19718426)
chr5 (164-214)||(19718048-19718098)
[»] chr6 (1 HSPs)
chr6 (16-79)||(17971300-17971363)
[»] scaffold0029 (1 HSPs)
scaffold0029 (16-66)||(71188-71238)


Alignment Details
Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 39992029 - 39992118
Alignment:
Q  16 acaatacttcaacatgttcacctcactcttcccaattctggatctgctgaatcaaatcagcttaaagaagattattgtaaaatgggtctg 105  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39992029 acaatacttgaacatgttcacctcactcttcccaattctggatctgctgaatcaaatcagcttaaagaagatgattgtaaaatgggtctg 39992118  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 39992177 - 39992227
Alignment:
Q  164 gatgagaggaagatgatgatgctgaacttgctgttgtttgatgttgctacc 214  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39992177 gatgagaggaagatgatgatgctgaaattgctgttgtttgatgttgctacc 39992227  T

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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 11039278 - 11039210
Alignment:
Q  16 acaatacttcaacatgttcacctcactcttcccaattctggatctgctgaatcaaatcagcttaaagaa 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11039278 acaatacttcaacatgttcacctcactcttcccaattctggatctgctgaatcaaatcagcttaaagaa 11039210  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 11038952 - 11038902
Alignment:
Q  164 gatgagaggaagatgatgatgctgaacttgctgttgtttgatgttgctacc 214  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  11038952 gatgagaggaagatgatgatgctgaaattgatgttgtttgatgttgctacc 11038902  T

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Target: chr2 (Bit Score: 65; Significance: 9e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 7190724 - 7190656
Alignment:
Q  16 acaatacttcaacatgttcacctcactcttcccaattctggatctgctgaatcaaatcagcttaaagaa 84  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7190724 acaatacttcaacatgttcatctcactcttcccaattctggatctgctgaatcaaatcagcttaaagaa 7190656  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 13809939 - 13810007
Alignment:
Q  16 acaatacttcaacatgttcacctcactcttcccaattctggatctgctgaatcaaatcagcttaaagaa 84  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13809939 acaatacttcaacatgttaacctcactcttcccaattatggatctgctgaatcaaatcagcttaaagaa 13810007  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 13810267 - 13810317
Alignment:
Q  164 gatgagaggaagatgatgatgctgaacttgctgttgtttgatgttgctacc 214  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  13810267 gatgagaggaagatgatgatgctgaaattgttgttgtttgatgttgctacc 13810317  T

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Target: chr1 (Bit Score: 65; Significance: 9e-29; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 2939343 - 2939275
Alignment:
Q  16 acaatacttcaacatgttcacctcactcttcccaattctggatctgctgaatcaaatcagcttaaagaa 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2939343 acaatacttcaacatgttcacctcactcttcccaattctggatctgctgaatcaaatcagattaaagaa 2939275  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 33332698 - 33332764
Alignment:
Q  16 acaatacttcaacatgttcacctcactcttcccaattctggatctgctgaatcaaatcagcttaaag 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33332698 acaatacttcaacatgttcacctcactcttcccaattctggatctgctgaatcaaatcagcctaaag 33332764  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 46015214 - 46015282
Alignment:
Q  16 acaatacttcaacatgttcacctcactcttcccaattctggatctgctgaatcaaatcagcttaaagaa 84  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  46015214 acaatacttcaacatgttaacctcactcttcccaattctggatctgcttaatcaaatcagcttaaagaa 46015282  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 46015541 - 46015591
Alignment:
Q  164 gatgagaggaagatgatgatgctgaacttgctgttgtttgatgttgctacc 214  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  46015541 gatgagaggaagatgatgatgctgaaattgctgttgtttgatgttgctacc 46015591  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 2938954 - 2938910
Alignment:
Q  165 atgagaggaagatgatgatgctgaacttgctgttgtttgatgttg 209  Q
    ||||||||| ||||||||||| ||| ||| |||||||||||||||    
T  2938954 atgagaggatgatgatgatgccgaaattgttgttgtttgatgttg 2938910  T

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Target: chr8 (Bit Score: 63; Significance: 1e-27; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 9311720 - 9311654
Alignment:
Q  18 aatacttcaacatgttcacctcactcttcccaattctggatctgctgaatcaaatcagcttaaagaa 84  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9311720 aatacttcaacatgttcacctcactcttcccaattctagatctgctgaatcaaatcagcttaaagaa 9311654  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 14817391 - 14817323
Alignment:
Q  16 acaatacttcaacatgttcacctcactcttcccaattctggatctgctgaatcaaatcagcttaaagaa 84  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||| ||||||    
T  14817391 acaatacttcaacatgttcacctcactcttcccaattatggatctactgaatcaaattagctaaaagaa 14817323  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 14828348 - 14828416
Alignment:
Q  16 acaatacttcaacatgttcacctcactcttcccaattctggatctgctgaatcaaatcagcttaaagaa 84  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||| ||||||    
T  14828348 acaatacttcaacatgttcacctcactcttcccaattatggatctactgaatcaaattagctaaaagaa 14828416  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 14816938 - 14816891
Alignment:
Q  167 gagaggaagatgatgatgctgaacttgctgttgtttgatgttgctacc 214  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||    
T  14816938 gagaggaagatgatgatgctgaaattgctgctgtttgatgttgctacc 14816891  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 14828802 - 14828849
Alignment:
Q  167 gagaggaagatgatgatgctgaacttgctgttgtttgatgttgctacc 214  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||    
T  14828802 gagaggaagatgatgatgctgaaattgctgctgtttgatgttgctacc 14828849  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 9311396 - 9311346
Alignment:
Q  164 gatgagaggaagatgatgatgctgaacttgctgttgtttgatgttgctacc 214  Q
    |||||||||||||||||||||||||| ||| ||||||||||||| ||||||    
T  9311396 gatgagaggaagatgatgatgctgaaattgatgttgtttgatgtcgctacc 9311346  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 45087796 - 45087730
Alignment:
Q  16 acaatacttcaacatgttcacctcactcttcccaattctggatctgctgaatcaaatcagcttaaag 82  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  45087796 acaatacttcaacatgttcacctcactcttcccaattttggatcttctgaatcaaatcagcttaaag 45087730  T

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Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 19718426 - 19718358
Alignment:
Q  16 acaatacttcaacatgttcacctcactcttcccaattctggatctgctgaatcaaatcagcttaaagaa 84  Q
    ||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||    
T  19718426 acaatacttcaacatgttcacctcactcttcccaattatggatcagttgaatcaaatcagcttaaagaa 19718358  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 19718098 - 19718048
Alignment:
Q  164 gatgagaggaagatgatgatgctgaacttgctgttgtttgatgttgctacc 214  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  19718098 gatgagaggaagatgatgatgctgaaattgatgttgtttgatgttgctacc 19718048  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 17971300 - 17971363
Alignment:
Q  16 acaatacttcaacatgttcacctcactcttcccaattctggatctgctgaatcaaatcagctta 79  Q
    ||||||||| |||||||||||||||||||||  ||||| |||||||||||||||||||||||||    
T  17971300 acaatactttaacatgttcacctcactcttcttaattccggatctgctgaatcaaatcagctta 17971363  T

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Target: scaffold0029 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 71188 - 71238
Alignment:
Q  16 acaatacttcaacatgttcacctcactcttcccaattctggatctgctgaa 66  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  71188 acaatacttcaacatgttcacctcactcttcccgattctggatatgctgaa 71238  T

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