View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20146_low_61 (Length: 202)

Name: NF20146_low_61
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20146_low_61
NF20146_low_61
[»] chr2 (1 HSPs)
chr2 (15-187)||(2242973-2243145)
[»] chr5 (1 HSPs)
chr5 (15-136)||(31780232-31780352)
[»] chr8 (1 HSPs)
chr8 (88-173)||(29057207-29057292)


Alignment Details
Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 2243145 - 2242973
Alignment:
Q  15 agcacagataaggaaaaacagaaaaaggttaaaggaatttatgaagtacatagatagaaacnnnnnnnnaatattttctctgaactttcatccttcaaag 114  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  2243145 agcacaaataaggaaaaacagaaaaaggttaaaggaatttatgaagtacatagatagaaactttttttaaatattttctctgaactttcatccttcaaag 2243046  T
Q  115 tctaaggattgctaagttatttcaacttatccagagaaaagtaacatgattgcaatttcttcactgtcatttg 187  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2243045 tctaaggattgctaagttatttcaacttatctagagaaaagtaacatgattgcaatttcttcactgtcatttg 2242973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 31780352 - 31780232
Alignment:
Q  15 agcacagataaggaaaaacagaaaaaggttaaaggaatttatgaagtacatagatagaaacnnnnnnnnaatattttctctgaactttcatccttcaaag 114  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||        |||||||||||||||||||||||||||||||    
T  31780352 agcacaaataaggaaaaaca-aaaaaggttaaaggaatttatgaagtacatacatagaaactttttttaaatattttctctgaactttcatccttcaaag 31780254  T
Q  115 tctaaggattgctaagttattt 136  Q
    |||||||||||| |||||||||    
T  31780253 tctaaggattgccaagttattt 31780232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 29057292 - 29057207
Alignment:
Q  88 ttttctctgaactttcatccttcaaagtctaaggattgctaagttatttcaacttatccagagaaaagtaacatgattgcaatttc 173  Q
    ||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||| | | ||||||||||||||  |||||||||    
T  29057292 ttttctctgaattttcatccttcaaagtctaacgattgctaaattatttcaacttagctacagaaaagtaacatgtctgcaatttc 29057207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University