View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20146_low_7 (Length: 556)

Name: NF20146_low_7
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20146_low_7
NF20146_low_7
[»] chr5 (2 HSPs)
chr5 (14-255)||(19696530-19696761)
chr5 (389-434)||(37022993-37023038)
[»] chr7 (4 HSPs)
chr7 (439-538)||(44970164-44970263)
chr7 (389-435)||(49017057-49017103)
chr7 (389-434)||(11907775-11907820)
chr7 (389-434)||(44970071-44970116)
[»] chr6 (3 HSPs)
chr6 (439-497)||(26229292-26229350)
chr6 (388-434)||(19292958-19293004)
chr6 (394-434)||(29968733-29968773)
[»] chr1 (4 HSPs)
chr1 (443-493)||(1787416-1787466)
chr1 (389-434)||(46671543-46671588)
chr1 (389-429)||(43671454-43671494)
chr1 (508-541)||(41502971-41503004)
[»] chr3 (5 HSPs)
chr3 (443-541)||(43410211-43410309)
chr3 (388-434)||(8541096-8541142)
chr3 (389-423)||(50770145-50770179)
chr3 (388-429)||(47278368-47278409)
chr3 (389-429)||(27813512-27813552)
[»] chr2 (2 HSPs)
chr2 (389-434)||(43822925-43822970)
chr2 (389-423)||(26822978-26823012)
[»] scaffold0648 (1 HSPs)
scaffold0648 (389-434)||(4605-4650)
[»] scaffold0274 (1 HSPs)
scaffold0274 (389-434)||(4075-4120)
[»] chr4 (1 HSPs)
chr4 (389-434)||(16204740-16204785)
[»] chr8 (1 HSPs)
chr8 (394-434)||(19779881-19779920)


Alignment Details
Target: chr5 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 14 - 255
Target Start/End: Original strand, 19696530 - 19696761
Alignment:
Q  14 ttctgaatcagtatagtgttgtttgtgtttggttctcatgagcaacttgtataataaacaactgtatccttcaaaactcctagnnnnnnnnggaatacag 113  Q
    |||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||| ||||||        |||||||||    
T  19696530 ttctgaatcagtatagtgttgtttgtgtttggttctcatga---------ataataaacaactgtatccttcaaaaatcctagaaaaaaa-ggaatacag 19696619  T
Q  114 gtcagctaacaaaccctagaaaaaaccctaagtatttttactgaaataaccttgagctccaaaatgttgcctttttaaaatagtgttttttactgaaata 213  Q
    ||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19696620 gtctgctaacaaaccctagaaaaaaccctaagtttttttactaaaataaccttgagctccaaaatgctgcctttttaaaatagtgttttttactgaaata 19696719  T
Q  214 cccttaaccaactcattaagagagagaaccacgtgaaagata 255  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  19696720 cccttaaccaactcattaagagagagaaccacgtgaaagata 19696761  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 37023038 - 37022993
Alignment:
Q  389 caggagcggatctcttcagagaccaccaggtgccactgcactcccc 434  Q
    |||| ||||||||||||||||||| |||||||||||||||| ||||    
T  37023038 caggggcggatctcttcagagacccccaggtgccactgcacccccc 37022993  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 439 - 538
Target Start/End: Original strand, 44970164 - 44970263
Alignment:
Q  439 ttgccgttgaagtggttatgcgctccctcagtgaattgaaggtcatgcgttcgattcccagacaccctcctttttataattcttaaagaatttttcttat 538  Q
    ||||| ||||||||||||||||||||| || | |||||||||||| ||||| ||||||  | |||||||||||||||||||||||| |||||||||||||    
T  44970164 ttgccattgaagtggttatgcgctcccccaataaattgaaggtcacgcgtttgattccttggcaccctcctttttataattcttaacgaatttttcttat 44970263  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 435
Target Start/End: Complemental strand, 49017103 - 49017057
Alignment:
Q  389 caggagcggatctcttcagagaccaccaggtgccactgcactccccc 435  Q
    |||| ||||||||||| ||||||| |||||||||||||||| |||||    
T  49017103 caggggcggatctctttagagacccccaggtgccactgcaccccccc 49017057  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 11907820 - 11907775
Alignment:
Q  389 caggagcggatctcttcagagaccaccaggtgccactgcactcccc 434  Q
    |||| ||||||||||||||||||  |||||||||||||||| ||||    
T  11907820 caggggcggatctcttcagagactcccaggtgccactgcacccccc 11907775  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 44970071 - 44970116
Alignment:
Q  389 caggagcggatctcttcagagaccaccaggtgccactgcactcccc 434  Q
    |||| ||||||||||||||||||  |||||||||||||||| ||||    
T  44970071 caggggcggatctcttcagagactcccaggtgccactgcacccccc 44970116  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 439 - 497
Target Start/End: Original strand, 26229292 - 26229350
Alignment:
Q  439 ttgccgttgaagtggttatgcgctccctcagtgaattgaaggtcatgcgttcgattccc 497  Q
    ||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||    
T  26229292 ttgccgttgaagtggttatccgctcccttagtgaattgaaggtcacgcgttcgattccc 26229350  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 434
Target Start/End: Complemental strand, 19293004 - 19292958
Alignment:
Q  388 gcaggagcggatctcttcagagaccaccaggtgccactgcactcccc 434  Q
    ||||| ||||||||||||||||||| |||||||||||||||| ||||    
T  19293004 gcaggggcggatctcttcagagacccccaggtgccactgcacccccc 19292958  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 434
Target Start/End: Complemental strand, 29968773 - 29968733
Alignment:
Q  394 gcggatctcttcagagaccaccaggtgccactgcactcccc 434  Q
    ||||||||||| ||||||| |||||||||||||||| ||||    
T  29968773 gcggatctctttagagacccccaggtgccactgcacccccc 29968733  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 443 - 493
Target Start/End: Original strand, 1787416 - 1787466
Alignment:
Q  443 cgttgaagtggttatgcgctccctcagtgaattgaaggtcatgcgttcgat 493  Q
    |||||||||||||||||||||||||||| |||||||| ||| |||||||||    
T  1787416 cgttgaagtggttatgcgctccctcagtaaattgaagatcacgcgttcgat 1787466  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 46671588 - 46671543
Alignment:
Q  389 caggagcggatctcttcagagaccaccaggtgccactgcactcccc 434  Q
    |||| ||||||||||||||||||| |||||||||||||||| ||||    
T  46671588 caggggcggatctcttcagagacccccaggtgccactgcacccccc 46671543  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 429
Target Start/End: Complemental strand, 43671494 - 43671454
Alignment:
Q  389 caggagcggatctcttcagagaccaccaggtgccactgcac 429  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  43671494 caggagcggatctctttagagacccccaggtgccactgcac 43671454  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 541
Target Start/End: Original strand, 41502971 - 41503004
Alignment:
Q  508 ctttttataattcttaaagaatttttcttatttt 541  Q
    ||||||||||||||||| ||||||||||||||||    
T  41502971 ctttttataattcttaacgaatttttcttatttt 41503004  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 541
Target Start/End: Original strand, 43410211 - 43410309
Alignment:
Q  443 cgttgaagtggttatgcgctccctcagtgaattgaaggtcatgcgttcgattcccagacaccctcctttttataattcttaaagaatttttcttatttt 541  Q
    ||||| || |||||| || ||| ||| || ||| ||||||  ||||| ||| |||  ||||||||||||||||||||||||  ||||||||||||||||    
T  43410211 cgttggagcggttatacggtccatcaatgtattaaaggtcgcgcgtttgatcccctaacaccctcctttttataattcttagcgaatttttcttatttt 43410309  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 434
Target Start/End: Original strand, 8541096 - 8541142
Alignment:
Q  388 gcaggagcggatctcttcagagaccaccaggtgccactgcactcccc 434  Q
    ||||| ||||||||||| ||||||| |||||||||||||||| ||||    
T  8541096 gcaggggcggatctctttagagacccccaggtgccactgcacccccc 8541142  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 423
Target Start/End: Complemental strand, 50770179 - 50770145
Alignment:
Q  389 caggagcggatctcttcagagaccaccaggtgcca 423  Q
    |||||||||||||||||||||||| ||||||||||    
T  50770179 caggagcggatctcttcagagacccccaggtgcca 50770145  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 429
Target Start/End: Complemental strand, 47278409 - 47278368
Alignment:
Q  388 gcaggagcggatctcttcagagaccaccaggtgccactgcac 429  Q
    ||||| ||||||||||| ||||||| ||||||||||||||||    
T  47278409 gcaggggcggatctctttagagacccccaggtgccactgcac 47278368  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 429
Target Start/End: Original strand, 27813512 - 27813552
Alignment:
Q  389 caggagcggatctcttcagagaccaccaggtgccactgcac 429  Q
    |||| ||||||||||| ||||||| ||||||||||||||||    
T  27813512 caggggcggatctctttagagacccccaggtgccactgcac 27813552  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 43822970 - 43822925
Alignment:
Q  389 caggagcggatctcttcagagaccaccaggtgccactgcactcccc 434  Q
    |||| ||||||||||||||||||| |||||||||||||||| ||||    
T  43822970 caggggcggatctcttcagagacccccaggtgccactgcacccccc 43822925  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 423
Target Start/End: Original strand, 26822978 - 26823012
Alignment:
Q  389 caggagcggatctcttcagagaccaccaggtgcca 423  Q
    |||||||||||||||||||||||| ||||||||||    
T  26822978 caggagcggatctcttcagagacccccaggtgcca 26823012  T

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Target: scaffold0648 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 4650 - 4605
Alignment:
Q  389 caggagcggatctcttcagagaccaccaggtgccactgcactcccc 434  Q
    |||| ||||||||||| ||||||| |||||||||||||||| ||||    
T  4650 caggggcggatctctttagagacccccaggtgccactgcacccccc 4605  T

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Target: scaffold0274 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 4120 - 4075
Alignment:
Q  389 caggagcggatctcttcagagaccaccaggtgccactgcactcccc 434  Q
    |||| ||||||||||| ||||||| |||||||||||||||| ||||    
T  4120 caggggcggatctctttagagacccccaggtgccactgcacccccc 4075  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 16204740 - 16204785
Alignment:
Q  389 caggagcggatctcttcagagaccaccaggtgccactgcactcccc 434  Q
    |||| ||||||||||| ||||||| |||||||||||||||| ||||    
T  16204740 caggggcggatctctttagagacccccaggtgccactgcacccccc 16204785  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 434
Target Start/End: Complemental strand, 19779920 - 19779881
Alignment:
Q  394 gcggatctcttcagagaccaccaggtgccactgcactcccc 434  Q
    ||||||||||||||||||| |||||||||||||||| ||||    
T  19779920 gcggatctcttcagagacc-ccaggtgccactgcacccccc 19779881  T

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