View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20146_low_8 (Length: 555)
Name: NF20146_low_8
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 237 - 536
Target Start/End: Complemental strand, 33129994 - 33129695
Alignment:
| Q |
237 |
gcatacaaaaaataccggctcccactacactagaatttttaccatcaaattttaaccggatacgattcattttcccttatttaatgtcggtatataaaga |
336 |
Q |
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| T |
33129994 |
gcatacaaaaaataccggctcccactacactagaatttttaccatcaaattttaaccggatacgattcattttcccttatttaatgtcggtatataaaga |
33129895 |
T |
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| Q |
337 |
aacacagtcacacctaaaatccctctctatattcttccttcactcactgcatctctaaaacccaaacttcacgttcttggcggcgacacttcacttcact |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33129894 |
aacacagtcacacctaaaatccctctctatattcttccttcactcactgcatctctaaaacccaaacttcacgttcttggcggcgacacttcacttcact |
33129795 |
T |
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| Q |
437 |
cgatccatcatgccttctgttgctccttcctctgaacgtatccttgcttcccctcttccactctctttatatgctttctctttttgttatttttctcgat |
536 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33129794 |
cgatctatcatgccttctgttgctccttcctctgaacgtatccttgcttcccctcttccactctctttatatactttctctttttgttatttttctcgat |
33129695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 33130230 - 33130041
Alignment:
| Q |
1 |
ttgacattttctttgttgatgatgattaatccatattgcttagactacctcatatgtatgcactaaatgcagtctcgatctgcgtaactaaagttttcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||| ||||||| |
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| T |
33130230 |
ttgacattttctttgttgatgatgattaatccatattgcttagactacgtcatatgtatgcactaaatgtagtctcgatctgcgcaactaaaattttcct |
33130131 |
T |
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| Q |
101 |
tgtcaaatgccgtattgtcccatcgaatgtaccaaatttgttgatgaagcgagaatttaaccgaagtttagccgaatgccctctactatg |
190 |
Q |
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| T |
33130130 |
tgtcaaatgccgtattgtcccaccgaatgtatcaaatttgttgatgaagcgagaatttaaccgaagtttagccgaatgccctctactatg |
33130041 |
T |
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