View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20146_low_9 (Length: 553)
Name: NF20146_low_9
Description: NF20146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20146_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 7 - 276
Target Start/End: Complemental strand, 31715232 - 31714964
Alignment:
| Q |
7 |
tagataatactaatagtgtaaatatcgtaatggctgtagaaaacatagagcaaaggatgaagaaaatcagatgaattcatgagaagctctacattgtttt |
106 |
Q |
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| T |
31715232 |
tagataatactaatagtgtaaatatcgtaatggctgtacaaaacatagagcaaaggatgaagaaaatctgatgatttcatgagaagctctacattgtttt |
31715133 |
T |
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| Q |
107 |
atttaactcctttggaggaatgtaagtaaacatgtttgtccaccaaagccatctttcgc----------gtaccgcctttcaacaacaacatctgcccat |
196 |
Q |
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| T |
31715132 |
atttaactcctttggaggaatgtaagtaaacatgtttgtccaccaaagccatctttcgcacacatgtttgtaccgcctttcaacaacaacgtctgcccat |
31715033 |
T |
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| Q |
197 |
tggatttcaaagtctaacacacattggtgtgcttttgtaattgataataagactcttcacatttcttgcttgattaagag |
276 |
Q |
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| T |
31715032 |
tggatttcaaagtctaa-----------gtgcttttgtaattgataataagactcttcacatttcttgcttgattaagag |
31714964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 333 - 531
Target Start/End: Complemental strand, 31714907 - 31714714
Alignment:
| Q |
333 |
caggtgtttgatggggaagattaatgctatttctgaatctgaaatatgaataatgaaatagaataccttttaagatataagtgtaacttcatctctaact |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
31714907 |
caggtgtttgatggggaagattaatgctatttctgaatctgaaatatgaataatgaaatagaataccttt-aagatataagtgtaactttatctctaac- |
31714810 |
T |
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| Q |
433 |
aacataaggggtagctatgcttggtgctgcataatccggcttcagttctggcttttatttatctagcagtatgttgagaacattgaactttggatagca |
531 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31714809 |
---ataaggggtagctatgcttggtgctgcataatccggcttcagttctggcttttatttatctagcagtatgttgagaacattgaactttggatagca |
31714714 |
T |
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