View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20147_high_10 (Length: 421)
Name: NF20147_high_10
Description: NF20147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20147_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 409
Target Start/End: Original strand, 31789658 - 31790047
Alignment:
| Q |
14 |
gaagacaacaaactacttttatttgatttaaataccaagaagattgtagagcttggtcttaatagagaattcaaaatgggtttttgtcaggttaactttt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
31789658 |
gaagacaacaaactacttttatttgatttaaataccaagaagattgcagagcttggtcttaatagagaagacaaaatgggttttcatcaggttaactttt |
31789757 |
T |
|
| Q |
114 |
acaagaaaagccttcttccaatcaaaaagaataaataattaattattatttgtcccgttttactcatgattgtggttattgacattttacctttcgtaga |
213 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31789758 |
acaagaaaagccttcttccaatcaaaat-aataaataattaattattatttgtcccgttttactcatgattgtggttattgacattttacctttcgtaga |
31789856 |
T |
|
| Q |
214 |
aagtggcatgtcaattgctaatatcaaaattatttatcatcaagtatttgaaagacacattctagttgcctaggccatttgctttccttttttatgcctg |
313 |
Q |
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| T |
31789857 |
a-gtggcatgtcagttgctaatatcaaaattatt----atcaagtatttgaaagacacattcttgttgcctaggccttttgctttccttttttatgcctg |
31789951 |
T |
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| Q |
314 |
catattcttctttgtaattccagaatccagatatgttatcatttggatggataaatgtcataagttcaatattaatacaaaaatatattgtttgtg |
409 |
Q |
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| T |
31789952 |
catattctccattgtagtttcagaatccagatatgttatcatttggatggataaatgtcataagttcaatattaatacaaaaatatattgtttgtg |
31790047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 330
Target Start/End: Original strand, 32033007 - 32033324
Alignment:
| Q |
14 |
gaagacaacaaactacttttatttgatttaaataccaagaagattgtagagcttggtcttaatagagaattcaaaatgggtttttgtcaggttaactttt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
32033007 |
gaagacaacaaactacttttatttgatttaaataccaagaagattgtagagcttggtcttaatagcgaattcaaaatgggttttcatcaggttaactttt |
32033106 |
T |
|
| Q |
114 |
aca--agaaaagccttcttccaatcaaaaagaataaataattaattattatttgtcccgttttactcatgattgtggttattgacattttacctttcgta |
211 |
Q |
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| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32033107 |
atataagaaaagccttcttccaatcaaaaagaataaataattaattattatttgtcccgttttactcatgattgtggttattgacgttttacctttcgta |
32033206 |
T |
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| Q |
212 |
gaaagtggcatgtcaattgctaatatcaaaattatttatcatcaagtatttgaaagacacattctagttgcctaggccatttgctttccttttttatgcc |
311 |
Q |
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| T |
32033207 |
gaa-gtggcatgtcaattgctaatatcaaaattatttattatcaagtatttgaaagacacattctagttgcctaggccatttgctttccttttttatgcc |
32033305 |
T |
|
| Q |
312 |
tgcatattcttctttgtaa |
330 |
Q |
| |
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||||||||||||||||||| |
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| T |
32033306 |
tgcatattcttctttgtaa |
32033324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 170 - 394
Target Start/End: Original strand, 40545405 - 40545630
Alignment:
| Q |
170 |
gttttactcatgattgtggttattgacattttacctttcgtagaaagtggcatg-tcaattgctaatatcaaaattatttatcatcaagtatttgaaaga |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
40545405 |
gttttactcatgattgtggttattgacattttaccttttatagaaagtgg--tgatcaattgctaatatcaaaactatt----atcaagtatttgaaaga |
40545498 |
T |
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| Q |
269 |
cacattctagttgcctaggccatttgctttcc------ttttttatgcctgcatattcttctttgtaattccagaatccagatatgttatcatttggatg |
362 |
Q |
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||| ||||||||| |||||||||||||||||| |||||||||| |||||||||||| ||||| || |||||||| |||||||||||||||||||| |
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| T |
40545499 |
cactttctagttgactaggccatttgctttcctttcctttttttatgcatgcatattcttcattgtagtttcagaatcctgatatgttatcatttggatg |
40545598 |
T |
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| Q |
363 |
gataaatgtcataagttcaatattaatacaaa |
394 |
Q |
| |
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||||| ||||| |||||||||||||||||||| |
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| T |
40545599 |
gataagtgtcagaagttcaatattaatacaaa |
40545630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 40545254 - 40545314
Alignment:
| Q |
15 |
aagacaacaaactacttttatttgatttaaataccaagaagattgtagagcttggtcttaa |
75 |
Q |
| |
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|||||||| |||||||||| ||||||||||||||||||||||| || ||||||||| |||| |
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| T |
40545254 |
aagacaacgaactacttttgtttgatttaaataccaagaagatcgtcgagcttggtattaa |
40545314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 374 - 409
Target Start/End: Original strand, 32033322 - 32033357
Alignment:
| Q |
374 |
taagttcaatattaatacaaaaatatattgtttgtg |
409 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
32033322 |
taagttcaatattaatacaaaaatatattgtttgtg |
32033357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 5162591 - 5162764
Alignment:
| Q |
17 |
gacaacaaactacttttatttgatttaaataccaagaagattgtagagcttggtcttaatagagaattcaaaatgggtttttgtcaggttaacttttaca |
116 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||| | | | | | || | || ||||| |||| |||||| |
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| T |
5162591 |
gacaacaaactacttttgtttgatttaaataccaacaagattgttgagcttggacttaaaataagagatagattgactcttggtcagattaaagtttaca |
5162690 |
T |
|
| Q |
117 |
agaaaagccttcttccaatcaaaaagaataaataattaattattatttgtcccgttttactcatgattgtggttattga |
195 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
5162691 |
agaaaagccttcttccaatc-aaaagaata---aattaattatta-ctgtcccgttttactcatgattatggttattga |
5162764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 297 - 394
Target Start/End: Original strand, 5162814 - 5162911
Alignment:
| Q |
297 |
ttccttttttatgcctgcatattcttctttgtaattccagaatccagatatgttatcatttggatggataaatgtcataagttcaatattaatacaaa |
394 |
Q |
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||||||| ||||||||||||||||||| ||||| || |||||||| ||||||||||||||| ||| ||||||| | | ||||||||||||||||||| |
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| T |
5162814 |
ttcctttcttatgcctgcatattcttcattgtagtttcagaatcctgatatgttatcatttagatagataaatacctttagttcaatattaatacaaa |
5162911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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