View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20147_high_11 (Length: 416)
Name: NF20147_high_11
Description: NF20147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20147_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 13 - 401
Target Start/End: Complemental strand, 53174862 - 53174474
Alignment:
| Q |
13 |
actatccaccactggttctgtttcatctattcttcatggtaactacataaacctctttatttgtcatagaaatgatgttttggtatcaaaacatgaaatg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53174862 |
actatccaccactggttctgtttcatctattcttcatggtaactacataaacctctttatttgtcatagaaatgatgttttggtatcaaaacatgaaatg |
53174763 |
T |
|
| Q |
113 |
nnnnnnngggttgttaatagtatatgaaaatcttgttatattgtagatgaaaagttggctcctttagattggaaaacaagacataaaatagttgttggga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53174762 |
aaaaaaagggttgttaatagtatatgaaaatcttgttatattgtagatgaacagttggctcctttagattggaaaacaagacataaaatagttgttggga |
53174663 |
T |
|
| Q |
213 |
cagcgcgtggacttcactacttgcacaaaggttgcaagaggagaataatccatagagatatcaaggcatcaaacattttattgacaaaagattttgaacc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53174662 |
cagcgcgtggacttcactacttgcacaaaggttgcaagaggagaataatccatagagatatcaaggcatcaaacattttattgacaaaagattttgaacc |
53174563 |
T |
|
| Q |
313 |
acaggttcttataaccttcaatgtttcaaatgttatgttatacagtttttcttatgtgtgttttctaatgaaagtttgttttgattgat |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53174562 |
acaggttcttataaccttcaatgtttcaaatgttatgttatacagtttttcttatgtgtgttttctaatgaaagtttgttttgattgat |
53174474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University