View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20147_high_12 (Length: 409)
Name: NF20147_high_12
Description: NF20147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20147_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 13 - 392
Target Start/End: Complemental strand, 29071598 - 29071219
Alignment:
| Q |
13 |
aatataatggcatcaacccttttggcatcaacagcaataatgctaagttctctaattgctgtgttaatgagtagtagaaatgaggggagaagtgttgtat |
112 |
Q |
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| T |
29071598 |
aatataatggcatcaacccttttggcatcaacagcaataatgctaagttctctaattgctgtgttaatgagtagtagaaatgagggaagaagtgttgtat |
29071499 |
T |
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| Q |
113 |
cattagtggttggtgatagaactgagctagttttatcaatcaaatttttctccatattggtttgtttcatgttagctttcttgttaaatgttcaatctat |
212 |
Q |
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| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29071498 |
cgttagtgtttggtgatagaactgagctagttttatcaatcaaatttttctccatattggtttgtttcatgttagctttcttgttgaatgttcaatctat |
29071399 |
T |
|
| Q |
213 |
aaggtactatagtcatgcaagcattctcatcaatgttcctttcaagaaactgtcatcaaaccttagacaacagaagctgacagctgagtatgttgccaat |
312 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29071398 |
aaggtactatagtcatgcaagcatactcatcaatgttcctttcaagaaactatcatcaaaccttagacaacagaagctgacagctgagtatgttgccaat |
29071299 |
T |
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| Q |
313 |
acagttaaccgtggaagctatttctggtcacttggtttgcgtgcattttacttttccttccctcttttcatgtggatctt |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29071298 |
acagttaaccgtggaagctatttctggtcacttggtttgcgtgcattttacttttccttccctcttttcatgtggatctt |
29071219 |
T |
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