View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20147_high_15 (Length: 400)
Name: NF20147_high_15
Description: NF20147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20147_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 383
Target Start/End: Complemental strand, 8111011 - 8110645
Alignment:
| Q |
17 |
tattgtacggtacctagcacattctatttgatgggtgtaatacgattttaattatttttcaatttgtaatataaatggtataggctataggcctaaaacc |
116 |
Q |
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| T |
8111011 |
tattgtacggtgcctagttcattctatttgatgggtgtaatacgatttttattaattttcaatttgtaatgtatatggtataggctataggcctaaaacc |
8110912 |
T |
|
| Q |
117 |
attggggagtggttgttattgtttggtctgaagcatattaagattatatgttgtttttagtttgagcttgtttaaattgattgtgctttcgcatatcaat |
216 |
Q |
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| T |
8110911 |
attggggagtggttgttattgtttggtctcaagcatattaatattatatgttgtttttagtttgagcttgtttaaattgattgtgctttcgcatatcaat |
8110812 |
T |
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| Q |
217 |
gttcatattctttatgtataagtattattgaatttaatatgatcgcaatttttatgctaaattttctatgggtgttaaattataattagctaatatattg |
316 |
Q |
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| T |
8110811 |
gctcatattctttatgtagaagtattatagaatttaatatgatcgcaatttttatgctaaactttctatgggttttaaattaaaattagttaatatattg |
8110712 |
T |
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| Q |
317 |
ttcctttcgatcaatcagatttcctttgtataaaacttattacgaagtagagaatttagactaaaat |
383 |
Q |
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| T |
8110711 |
ttcctttcgaacaatcggtcttcctttgtataaaacttattacgaagtagagaatttagattaaaat |
8110645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 383
Target Start/End: Complemental strand, 8094791 - 8094422
Alignment:
| Q |
17 |
tattgtacggtacctagcacattctatttgatgggtgtaatacgattttaattatttttcaatttgtaatataaatggtataggctataggcctaaaacc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8094791 |
tattgtacggtacctagcacattctatttgatgggtgtaattcgattttaattatttttcaatttgtaatgtaaatggtataggctataggcctaaaacc |
8094692 |
T |
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| Q |
117 |
attggggagtggttgttattgtttggtctgaagcatattaagattatatgttgtttttagtttgagcttgtttaaattgattgtgctttcgcatatcaat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8094691 |
attggggagtggttgttattgtttggtctgaagcatattaagactatatgttgtttttagtttaagcttgtttaaattgattgtgctttcgcatatcaat |
8094592 |
T |
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| Q |
217 |
gttcatattctttatgtataagtattattgaatttaatatgatcgcaatttttatgctaaattttctatgggtgttaaattataattag----ctaatat |
312 |
Q |
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| |||||||| ||||||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| |
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| T |
8094591 |
gctcatattc-ttatgtataagtattattgaattgaatacgatagcaatttttatgctaaactttctatgggttttaaattataattagcttcctaatat |
8094493 |
T |
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| Q |
313 |
attgttcctttcgatcaatcagatttcctttgtataaaacttattacgaagtagagaatttagactaaaat |
383 |
Q |
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||||||| ||||||||||| || ||||||| ||| ||||||| |||||||||||||||||||| |||||| |
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| T |
8094492 |
gttgttcccttcgatcaatcggacttcctttttattaaacttagtacgaagtagagaatttagagtaaaat |
8094422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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