View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20147_high_18 (Length: 376)
Name: NF20147_high_18
Description: NF20147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20147_high_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 23 - 364
Target Start/End: Complemental strand, 9605276 - 9604931
Alignment:
| Q |
23 |
tggagctgtattgatgctaacatgcaaaaatcattattgattcttcttcatttatataggctatctttgagtcattatataccaaagttgattgtattga |
122 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
9605276 |
tggagctctgttgatgctaacatgcaaaaatcattattgattcttcttcatttatataggctatctttgagtcat-atataccaaagttgtttgtattga |
9605178 |
T |
|
| Q |
123 |
ttgcatatgcctagcattatatagcccacgtactcaagttttttggacccatgatcgtgggacattt--tttatatatatgaattgagggtgctaacaaa |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||| |
|
|
| T |
9605177 |
ttgcatatgcctagcattatatagcccacgtactcaagttttttggacccatgatcgtgtgacattttatatatatatatgaattgaaggtgctaacaaa |
9605078 |
T |
|
| Q |
221 |
gtgttt-agtaaagcttatatatcatcttgcttttctgaccaagttattaattcttacatgtacaagatcaacttatatttaagagatg-ccacgtgtat |
318 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||| |
|
|
| T |
9605077 |
gtgtttgagtaaagcttatatatcatcttgcttttctgaccaagttattaattcttacatgtacaaaatcaacttatatttgagagatgcccacgtgtat |
9604978 |
T |
|
| Q |
319 |
gtgaaaactt-gggtaggatctttaaagtgtttctaattagtatatt |
364 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9604977 |
gtgaaaacttggggtaggatctttaaagtgtttctcattagtatatt |
9604931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University