View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20147_high_27 (Length: 291)
Name: NF20147_high_27
Description: NF20147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20147_high_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 121 - 275
Target Start/End: Complemental strand, 40406447 - 40406293
Alignment:
| Q |
121 |
attcaaccttaaccaagtactttccacaccccacatctctgaataccactccctcctctccttcaaatcctccataacaaacgacccacaaaacatcctc |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40406447 |
attcaaccttaaccaagtactttccacaccccacatctctgaataccactccctcctctccttcaaatcctccataacaaacgacccacaaaacatcctc |
40406348 |
T |
|
| Q |
221 |
acctcatggaacccaaaaaccccttactgttcctggtacggcatcaaatgttccc |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40406347 |
acctcatggaacccaaaaaccccttactgttcctggtacggcattaaatgttccc |
40406293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 40406550 - 40406510
Alignment:
| Q |
18 |
caatacttacttattccttcactctcactttcactcattca |
58 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40406550 |
caatacttacttattccttcactctcactttcactcattca |
40406510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University