View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20147_high_4 (Length: 530)
Name: NF20147_high_4
Description: NF20147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20147_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 31 - 514
Target Start/End: Original strand, 52069455 - 52069938
Alignment:
| Q |
31 |
gtgaaactaaatcaaattgagttgtctgttttcttactatatattagtagcatttaccttgaagacatagtgttccatgtgaagaagagattgaaacata |
130 |
Q |
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| T |
52069455 |
gtgaaactaaatcaaattgagttgtctgttttcttactatatattagtagcatttaccttgaagacatagtgttccatgtgaagaagagattgaaacata |
52069554 |
T |
|
| Q |
131 |
catgagatgtggatgctcaagttggccatttctagaaaggtagtaaattactggaactttaacctcagcctcagtctccaatgttttcctttccatggaa |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52069555 |
catgagatgtggatgctcaagttggccatttctagaaaggtagtaaattactggaactttaacctcagcctcagtctccaatgttttcctttccatggaa |
52069654 |
T |
|
| Q |
231 |
aattgatctttccttactactaaagatttggttcctatttttgtgaaggtagtgaactctaaggtattataacatttgggaagatgtggtagataattgg |
330 |
Q |
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| T |
52069655 |
aattgatctttccttactactaaagatttggttcctatttttgtgaaggtagtgaactctaaggtattattacatttgggaagatgtggtagataattgg |
52069754 |
T |
|
| Q |
331 |
catttaaaagtaaattgtggggggtaggtttgtctgtattagattttgaaggcaacaagtcaaacttctcaattttacaaagggaacatgtattttgttt |
430 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
52069755 |
catttaaaagtgaattgtggggggtaggtttgtctgtattagattttgaaggcaacaagtcaaacttctaaattttacaaagggaacatgtcttttgttt |
52069854 |
T |
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| Q |
431 |
gtttaacttattctactattattaccatacacctgagatattcacgaggcatcaacttgcatgtttatggtcaaatattatttg |
514 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52069855 |
gtttaacttattctactattattaacatacacctgagatattcacgaggcatcaacttgcatgtttatggtcaaatattatttg |
52069938 |
T |
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