View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20147_low_1 (Length: 650)
Name: NF20147_low_1
Description: NF20147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20147_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 10 - 632
Target Start/End: Complemental strand, 54281979 - 54281357
Alignment:
| Q |
10 |
aagaatatgttcggtaaaaataacttcaaccaaaatgccacatttcgggtgaatccaagccagacacttgaacttctccacagtatatcaaatatcattc |
109 |
Q |
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| T |
54281979 |
aagaaaatgttcggtaaaaataacttcaaccaaaatgccacatttcgggtgaatccaagccagacacttgaacttctccacagtatatcaaatatcattc |
54281880 |
T |
|
| Q |
110 |
tagttctagaaatccaattgttgttaggatggatgtgggtttggtaaaagtacaaaagtcaaagatgagatgaatttccttccaagtgatgaaattctat |
209 |
Q |
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| T |
54281879 |
tagttctagaaatccaagtgttgttaggatggatgtgggtttggtaaaagtacaaaagtcaa-gatgagatgaatttccttccaagtgatgaaattctat |
54281781 |
T |
|
| Q |
210 |
actgtgagtaatattcaatttgtgtctcgcaaaacaatcaacttaaacaccactacagttcagttcaattgataatttcaatcaatttatcaagtaccaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54281780 |
actgtgagtaatattcaatttgtgtctcgcaaaacaatcaacttaaacaccactacagttcagttcaattgataatttcaatcaatttatcaagtaccaa |
54281681 |
T |
|
| Q |
310 |
ttactttattttagtcctcacattccatagaaggttgtaatttatcacttcacataaatttgtagataaatttcagcaataaatatttgcagaatagaaa |
409 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
54281680 |
ttactttatttcagtcctcacattccatagaaggttgtaatttatcacttcacataaatttgcagataaatttcagcaataaatatttgcagaatagaaa |
54281581 |
T |
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| Q |
410 |
attgtggatgt-ttttgcttaagattgttaaataaaatttgaaatgagcaacttggaacacacccaccaaggcattttgttaagatttgtggatagtaga |
508 |
Q |
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||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| | |
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| T |
54281580 |
attgtggatgtttttttcttaagattgttaaataaaatttgaaaagagcaacttggaatacacccatcaaggcattttgttaagatttgtggatagtata |
54281481 |
T |
|
| Q |
509 |
caagtcctaattcacaaactttttagttaaatgatatgatcagaatacaagtgtcataatatgactgatttttacgcatatccagttcaaacccatgatt |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54281480 |
caagtcctaattcacaaactttttagttaaatgatatgatcagaatacaagtgtcataatatgactgatttttacgcatatccagttcaaacccatgatt |
54281381 |
T |
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| Q |
609 |
tcatagctaatttaaagtatctac |
632 |
Q |
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| T |
54281380 |
tcatagctaatttaaagtatctac |
54281357 |
T |
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