View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20147_low_13 (Length: 409)
Name: NF20147_low_13
Description: NF20147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20147_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 7 - 392
Target Start/End: Complemental strand, 8794774 - 8794389
Alignment:
| Q |
7 |
ttaacatgtcccaccgatggtttatgccatcctcaaatagtagtatattggtctgattcggattagataaaatacgatttgtctaactgattttcattct |
106 |
Q |
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| T |
8794774 |
ttaacatgtcccaccgatggtttatgccatcctcaaatagtattatattggtctgattcggattagataaaatacgatttgtttaactgattttcattct |
8794675 |
T |
|
| Q |
107 |
tgcagcacactagaccgttcaacaaccataaactgatcatcaaccaaattattccaaatttgattgtttctgtattttcaaatactccacaaaacaaaag |
206 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8794674 |
tgcagctcactagaccgttcaacaaccataaactgatcatcaaccaaattattccaaatttgattgtttctgtattttcaaatactccacaaaacataag |
8794575 |
T |
|
| Q |
207 |
caaataaagcagcctctatattttttaattgttgtaaaatttgacaaacaatactttaagcgtcttggattatgttcaccacatcactcacaagttgtga |
306 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8794574 |
caaataaagcagcctctatatttttcaattgttgtaaaatttgaaaaacaatactttaagcgtcttggattatgttcaccacatcactcacaagttgtga |
8794475 |
T |
|
| Q |
307 |
aagccttcataatctccacacattacaactacttgggtgcttgaagaaaatatgtaagctatcctcatcattattattgctcaaga |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8794474 |
aagccttcataatctccacacattacaactacttgggtgcttgaagaaaatatgtaagctatcctcatcattattattgctcaaga |
8794389 |
T |
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