View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20147_low_16 (Length: 396)
Name: NF20147_low_16
Description: NF20147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20147_low_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 17 - 396
Target Start/End: Original strand, 23971931 - 23972310
Alignment:
| Q |
17 |
tcatcttccattcttcacagataaacaacaaaaatgacaaacaaagcataatgtcaagtacataactaaacagcaataagagatccttaaaagaatgaga |
116 |
Q |
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| T |
23971931 |
tcatcttccattcttcacagataaacaacaaaaatgacaaacaacgcataatgtcaagtacataactaaacaacaataagagatccttaaaagaatggga |
23972030 |
T |
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| Q |
117 |
ttatttaaagggtagcataacataactttatgatctttaaacatcataatagatgcaagataaacacatacttttagtgatattaaacacatcaaaaatt |
216 |
Q |
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| T |
23972031 |
ttatttaaagagcagcataacataactttatgatctttaaacatcataacagatgcaagataaacacatacttttagtgatattaaacacatcaaaaatt |
23972130 |
T |
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| Q |
217 |
aaaacaaacaaatgaagtggaggagttaataaaggttccatc-taatgaaatgatctggaactaacaaaagaacacgattttggatcttaaaaatctagc |
315 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23972131 |
aaaacaaacaaatgaagtggaagagttaataaaggttccatctttatgaaatgatctggaactaacaaaagaacacgattttggatcttaaaaatctagc |
23972230 |
T |
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| Q |
316 |
aacatacacacaaacaaaacagagagtttaagtgaatctaaacacatcaaaactttctaaatataccttctaatttgtatt |
396 |
Q |
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| T |
23972231 |
aacatacacacaaa-aaaacagagagtctaagtgaatctaaacacatcaaaactttctaaatataccttctaatttgtatt |
23972310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 23041144 - 23041067
Alignment:
| Q |
155 |
aaacatcataatagatgcaagataaacacatacttttagtgatattaaacacatcaaaaattaaaacaaacaaatgaag |
233 |
Q |
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| T |
23041144 |
aaacatcataacagatccaagaaaaacacatgcttttagctatcttaaacacatc-aaaattaaaacaatgaaatgaag |
23041067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 27587495 - 27587427
Alignment:
| Q |
155 |
aaacatcataatagatgcaagataaacacatacttttagtgatattaaacacatcaaaaattaaaacaa |
223 |
Q |
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| T |
27587495 |
aaacagcataacagatccaagaaaaactcatgcttttagctatcttaaacacatcaaaaattaaaacaa |
27587427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 33538369 - 33538337
Alignment:
| Q |
17 |
tcatcttccattcttcacagataaacaacaaaa |
49 |
Q |
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| T |
33538369 |
tcatcttccattcttcatagataaacaacaaaa |
33538337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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