View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20147_low_17 (Length: 393)
Name: NF20147_low_17
Description: NF20147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20147_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 6884824 - 6885086
Alignment:
| Q |
1 |
attgaaatgaacacacacttgtgctcacaaactatcccatcattatacttttgatgttgcaaaggatatggggattcttgaggcaagtttggcatgagca |
100 |
Q |
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| T |
6884824 |
attgaaatgaacacacacttgtgctcacaaattatcccatcattatacttttgatgttgcaaaggatatggggattcttgaggcaagtttggcatgagca |
6884923 |
T |
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| Q |
101 |
tctccagtagtcattacttgaggtattgacatgccaccagatataacaatttctgtaacaacacatgagaacaaaaattattaaccaaaatcgaaaaact |
200 |
Q |
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| T |
6884924 |
tctccagtagtcattacttgaggtattgacatgccaccagatataacaatttctgtatcaacacatgagaacaaaaattattaacgaaaatcgaaaaact |
6885023 |
T |
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| Q |
201 |
ttggtgggaataacaatacaaaattattaaccagatataacaattttaatacaaaagttttgt |
263 |
Q |
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| T |
6885024 |
ttggtgggaataacaatacaaaattattaaccagatataacaattttaatacaaaagttttgt |
6885086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 6885097 - 6885148
Alignment:
| Q |
321 |
ttatgtggcaaggaactttatacatacctattccttcacgaacagagagatt |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6885097 |
ttatgtggcaaggaactttatacatacctattccttcacgaacagagagatt |
6885148 |
T |
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