View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20147_low_18 (Length: 380)
Name: NF20147_low_18
Description: NF20147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20147_low_18 |
 | |
|
| [»] scaffold0468 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 15803073 - 15802722
Alignment:
| Q |
13 |
catcatgtgataatccttcatatccacatagagatatatatccaatgctttttgatctgacgatcgaaaaaggcacttgtttgactctagtatttgctgc |
112 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15803073 |
catcatgtgataatcctttatatccacatagagatatatatccaatgctttttgatctgacgatcgaaaaaggcacttgtttgactctagtatttgctgc |
15802974 |
T |
|
| Q |
113 |
cattagagttttcaaggattccatttgcaatatatcttcgtctaatttgtcaatctttgaacaaccagaaaggatgagagttttcactgttctcaattga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15802973 |
cattagagttttcaaggattccatttgcaatatatcttcgtctaatttgtcaatctttgaacaaccagaaaggatgagagttttcactgttctcaattga |
15802874 |
T |
|
| Q |
213 |
tagatctctcttgggagattgctaagactcgtacagtccttcaaatttatcagaagaagattgttgagatctccaatggacgggtgtacctccaacagac |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15802873 |
tagatctctcttgggagattgctaagactcgtacagtccttcaaatttatcagaagaagattgttgagatctccaatggacgggtgtacctccaacagac |
15802774 |
T |
|
| Q |
313 |
tttgacaatccttcataattagcttttctaggtttggtaattttgaaaagtc |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15802773 |
tttgacaatccttcataattagcttttctaggtttggtaattttgaaaagtc |
15802722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 13 - 366
Target Start/End: Complemental strand, 20838794 - 20838441
Alignment:
| Q |
13 |
catcatgtgataatccttcatatccacatagagatatatatccaatgctttttgatctgacgatcgaaaaaggcacttgtttgactctagtatttgctgc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | || ||| | ||||||||||||| | |||||||||||| |
|
|
| T |
20838794 |
catcatgtgataatccttcatatccacatagtgatatatatccaatgctttttgatcttgctattgaatagggcacttgtttgataccagtatttgctgc |
20838695 |
T |
|
| Q |
113 |
cattagagttttcaaggattccatttgcaatatatcttcgtctaatttgtcaatctttgaacaaccagaaaggatgagagttttcactgttctcaattga |
212 |
Q |
| |
|
||||||| | |||||||||||||||||| ||||||||| || ||||| ||||||||||||||||||||||| || ||||||||||| | | |||||||| |
|
|
| T |
20838694 |
aattagagctgtcaaggattccatttgcattatatcttcttccaatttctcaatctttgaacaaccagaaagaataagagttttcaccgatatcaattga |
20838595 |
T |
|
| Q |
213 |
tagatctctcttgggagattgctaagactcgtacagtccttcaaatttatcagaagaagattgttgagatctccaatggacgggtgtacctccaacagac |
312 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||| ||||||||||||||| | ||| ||||| || ||||||||| |||||||||| | || | |
|
|
| T |
20838594 |
tagatctctcttgggagattggcaagacttttacagtccctcaaatttatcagaacgatattcttgaggtccccaatggactggtgtacctcaatcaagc |
20838495 |
T |
|
| Q |
313 |
tttgacaatccttcataattagcttttctaggtttggtaattttgaaaagtctg |
366 |
Q |
| |
|
| |||| ||| ||||||| ||||||||||| || ||||||||||||||||||| |
|
|
| T |
20838494 |
tcggacattccatcataatgagcttttctagattcggtaattttgaaaagtctg |
20838441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 13 - 366
Target Start/End: Complemental strand, 20812439 - 20812086
Alignment:
| Q |
13 |
catcatgtgataatccttcatatccacatagagatatatatccaatgctttttgatctgacgatcgaaaaaggcacttgtttgactctagtatttgctgc |
112 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| ||||||||| |||||||||||||||| | || ||| | ||||||||||||| | |||||||||||| |
|
|
| T |
20812439 |
catcacgtgataatccttcgtatccacatagtgatatatatgcaatgctttttgatcttgctattgaatagggcacttgtttgataccagtatttgctgc |
20812340 |
T |
|
| Q |
113 |
cattagagttttcaaggattccatttgcaatatatcttcgtctaatttgtcaatctttgaacaaccagaaaggatgagagttttcactgttctcaattga |
212 |
Q |
| |
|
||||||| | |||||||||||||||||| ||||||||| || || || ||||||||||||||||||||||| || ||||||||||| | | |||||| | |
|
|
| T |
20812339 |
aattagagctgtcaaggattccatttgcattatatcttcttccaacttctcaatctttgaacaaccagaaagaataagagttttcaccgatatcaattta |
20812240 |
T |
|
| Q |
213 |
tagatctctcttgggagattgctaagactcgtacagtccttcaaatttatcagaagaagattgttgagatctccaatggacgggtgtacctccaacagac |
312 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||| ||||||||||||||| | ||| ||||| || ||||||||| |||||||||| | || | |
|
|
| T |
20812239 |
tagatctctcttgggagattggcaagacttttacagtccctcaaatttatcagaacgatattcttgaggtccccaatggactggtgtacctcaatcaagc |
20812140 |
T |
|
| Q |
313 |
tttgacaatccttcataattagcttttctaggtttggtaattttgaaaagtctg |
366 |
Q |
| |
|
| |||| ||||||||||| ||||||||||| || ||||||||||||||||||| |
|
|
| T |
20812139 |
tcggacagtccttcataatgagcttttctagattcggtaattttgaaaagtctg |
20812086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 24 - 343
Target Start/End: Complemental strand, 30417971 - 30417652
Alignment:
| Q |
24 |
aatccttcatatccacatagagatatatatccaatgctttttgatctgacgatcgaaaaaggcacttgtttgactctagtatttgctgccattagagttt |
123 |
Q |
| |
|
||||||||| ||||||| || |||||||| |||||||||| || || || || |||||||| ||| || | | ||| |||||||||||||||||| |
|
|
| T |
30417971 |
aatccttcaaatccacacagggatatataaacaatgcttttcgaactaactatggaaaaaggtgctttttctataccagttcttgctgccattagagttt |
30417872 |
T |
|
| Q |
124 |
tcaaggattccatttgcaatatatcttcgtctaatttgtcaatctttgaacaaccagaaaggatgagagttttcactgttctcaattgatagatctctct |
223 |
Q |
| |
|
||||||||| |||||||| || |||||| || |||| ||| |||||||||||| ||| ||||||||| |||| | |||||||| | |||||||| |
|
|
| T |
30417871 |
tcaaggatttcatttgcactacatcttcttccaattcagtaatgtttgaacaaccatcaagtatgagagttgtcacagacatcaattgagatatctctct |
30417772 |
T |
|
| Q |
224 |
tgggagattgctaagactcgtacagtccttcaaatttatcagaagaagattgttgagatctccaatggacgggtgtacctccaacagactttgacaatcc |
323 |
Q |
| |
|
||| ||||||| |||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| |||||||| |
|
|
| T |
30417771 |
tggtagattgccaagacttgtacaatccttaaaatttatcagaagaagattattgagatctccaatggacgggtgtacctcggacaaacttggacaatcc |
30417672 |
T |
|
| Q |
324 |
ttcataattagcttttctag |
343 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
30417671 |
ttcataatgagcttttctag |
30417652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 124 - 361
Target Start/End: Original strand, 12599202 - 12599439
Alignment:
| Q |
124 |
tcaaggattccatttgcaatatatcttcgtctaatttgtcaatctttgaacaaccagaaaggatgagagttttcactgttctcaattgatagatctctct |
223 |
Q |
| |
|
||||||||||||| || | ||| ||||| || || ||| ||||||||||||||||||||| || |||||||||| ||| |||||||||||||||| | |
|
|
| T |
12599202 |
tcaaggattccatctgtactatgtcttcttccaacttgctaatctttgaacaaccagaaagtataagagttttcaaagttttcaattgatagatctcccg |
12599301 |
T |
|
| Q |
224 |
tgggagattgctaagactcgtacagtccttcaaatttatcagaagaagattgttgagatctccaatggacgggtgtacctccaacagactttgacaatcc |
323 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| ||||| | |||||| ||||| | ||||||||||||||| ||| |||||| ||| || | |||||| | |
|
|
| T |
12599302 |
tgggagattggtaagacttgtacagtccttgaaattcaacagaagtagattcctaagatctccaatggactggtatacctcatacaaacatggacaattc |
12599401 |
T |
|
| Q |
324 |
ttcataattagcttttctaggtttggtaattttgaaaa |
361 |
Q |
| |
|
|| ||| | || |||||||| || || ||||||||||| |
|
|
| T |
12599402 |
ttgatagtaagtttttctagattcggcaattttgaaaa |
12599439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 12599091 - 12599142
Alignment:
| Q |
13 |
catcatgtgataatccttcatatccacatagagatatatatccaatgctttt |
64 |
Q |
| |
|
||||| |||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
12599091 |
catcacgtgataatccttcatatccacacaaggatatatatccaatgctttt |
12599142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 15)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 364
Target Start/End: Original strand, 3391579 - 3391926
Alignment:
| Q |
17 |
atgtgataatccttcatatccacatagagatatatatccaatgctttttgatctgacgatcgaaaaaggcacttgtttgactctagtatttgctgccatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || ||||||||||| |||||||||||||||| |
|
|
| T |
3391579 |
atgtgataatccttcatatccacatagagatatatatccaatgctttttgatctcactatcgaaaatggtggttgtttgactccagtatttgctgccatt |
3391678 |
T |
|
| Q |
117 |
agagttttcaaggattccatttgcaatatatcttcgtctaatttgtcaatctttgaacaaccagaaaggatgagagttttcactgttctcaattgataga |
216 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3391679 |
agagttgtcaaggattccatttgcactatatcttcttccaatttgtcaatctttgaacaaccagaaaggatgagagtttccactgttctcaattgataga |
3391778 |
T |
|
| Q |
217 |
tctctcttgggagattgctaagactcgtacagtccttcaaatttatcagaagaagattgttgagatctccaatggacgggtgtacctccaacagactttg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3391779 |
tctctcttgggagattgctaagactcgtacagtccttcaaatttaacagaagaagattcttgagatctccaatggacgggtgtacctccaacagactttg |
3391878 |
T |
|
| Q |
317 |
acaatccttcataattagcttttctaggtttggtaattttgaaaagtc |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3391879 |
acaatccttcataattagcttttctaggtttggtaactttgaaaagtc |
3391926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 364
Target Start/End: Complemental strand, 3364327 - 3363980
Alignment:
| Q |
17 |
atgtgataatccttcatatccacatagagatatatatccaatgctttttgatctgacgatcgaaaaaggcacttgtttgactctagtatttgctgccatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || ||||||||||| |||||||||||||||| |
|
|
| T |
3364327 |
atgtgataatccttcatatccacatagagatatatatccaatgctttttgatctcactatcgaaaatggtggttgtttgactccagtatttgctgccatt |
3364228 |
T |
|
| Q |
117 |
agagttttcaaggattccatttgcaatatatcttcgtctaatttgtcaatctttgaacaaccagaaaggatgagagttttcactgttctcaattgataga |
216 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
3364227 |
agagttgtcaaggattccatttgcactatatcttcttccaatttgtcaatctttgaacaaccagaaaggatgagagtttccactcttctcaattgataga |
3364128 |
T |
|
| Q |
217 |
tctctcttgggagattgctaagactcgtacagtccttcaaatttatcagaagaagattgttgagatctccaatggacgggtgtacctccaacagactttg |
316 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
3364127 |
tctctcttgggagattgccaagactcgtacagtccttcaaatttaacataagaagattcttgagatctccaatggacgggtgtacctccagcaaactttg |
3364028 |
T |
|
| Q |
317 |
acaatccttcataattagcttttctaggtttggtaattttgaaaagtc |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3364027 |
acaatccttcataattagcttttctaggtttggtaattttgaaaagtc |
3363980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 364
Target Start/End: Complemental strand, 31176002 - 31175658
Alignment:
| Q |
20 |
tgataatccttcatatccacatagagatatatatccaatgctttttgatctgacgatcgaaaaaggcacttgtttgactctagtatttgctgccattaga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| | || ||| | ||||||||||||| | |||||||||||| |||| | |
|
|
| T |
31176002 |
tgataatccttcatatccacatagagatatatatgcaatgctttttgatcttgctattgaatagggcacttgtttgataccagtatttgctgcaattaaa |
31175903 |
T |
|
| Q |
120 |
gttttcaaggattccatttgcaatatatcttcgtctaatttgtcaatctttgaacaaccagaaaggatgagagttttcactgttctcaattgatagatct |
219 |
Q |
| |
|
||| |||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||| |||||| ||||||||| ||||| || ||||| || |
|
|
| T |
31175902 |
gttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatcattgaacaaccagaaagaatgagacttttcactgatctcactttatagacct |
31175803 |
T |
|
| Q |
220 |
ctcttgggagattgctaagactcgtacagtccttcaaatttatcagaagaagattgttgagatctccaatggacgggtgtacctccaacagactttgaca |
319 |
Q |
| |
|
|| |||||||||||| |||||| ||||||||||| |||||||||| ||||||||| ||||||||||||||||||| ||| ||||| ||| ||||||||| |
|
|
| T |
31175802 |
cttttgggagattgccaagacttgtacagtccttaaaatttatcaaaagaagattcttgagatctccaatggacgtgtgcacctcggacaaactttgaca |
31175703 |
T |
|
| Q |
320 |
atccttcataattagcttttctaggtttggtaattttgaaaagtc |
364 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
31175702 |
atccttcataattagcttttctagatttggtaattttgcaaagtc |
31175658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 21 - 366
Target Start/End: Original strand, 3398567 - 3398912
Alignment:
| Q |
21 |
gataatccttcatatccacatagagatatatatccaatgctttttgatctgacgatcgaaaaaggcacttgtttgactctagtatttgctgccattagag |
120 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||||| || ||||||||||| ||||||||||| | |||||||||||| ||||||| |
|
|
| T |
3398567 |
gataatcctttatatccacatagagatatatatgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacaccagtatttgctgcaattagag |
3398666 |
T |
|
| Q |
121 |
ttttcaaggattccatttgcaatatatcttcgtctaatttgtcaatctttgaacaaccagaaaggatgagagttttcactgttctcaattgatagatctc |
220 |
Q |
| |
|
|| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||| |
|
|
| T |
3398667 |
ttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatctttgaacaaccagaaataatgagagttttcactgatttcaattgatagatctc |
3398766 |
T |
|
| Q |
221 |
tcttgggagattgctaagactcgtacagtccttcaaatttatcagaagaagattgttgagatctccaatggacgggtgtacctccaacagactttgacaa |
320 |
Q |
| |
|
||||||||||||| |||||| ||||||||| ||||||||||||||| ||| | ||||| || ||||||||| |||||||||| ||| || |||| |
|
|
| T |
3398767 |
tcttgggagattggcaagacttgtacagtccctcaaatttatcagaacgagactcttgaggtccccaatggactggtgtacctcagacaagctcggacag |
3398866 |
T |
|
| Q |
321 |
tccttcataattagcttttctaggtttggtaattttgaaaagtctg |
366 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||||||||||||||| |
|
|
| T |
3398867 |
tccttcataatgagcttttctagattcggtaattttgaaaagtctg |
3398912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 3315020 - 3314669
Alignment:
| Q |
13 |
catcatgtgataatccttcatatccacatagagatatatatccaatgctttttgatctgacgatcgaaaaaggcacttgtttgactctagtatttgctgc |
112 |
Q |
| |
|
||||| ||||||| ||||||||| ||||||| ||||||||||||||| |||||||| | || ||||||||||| ||||||||||| | ||| |||||||| |
|
|
| T |
3315020 |
catcacgtgataaaccttcatattcacatagggatatatatccaatgttttttgatttaacaatcgaaaaaggaacttgtttgacaccagtttttgctgc |
3314921 |
T |
|
| Q |
113 |
cattagagttttcaaggattccatttgcaatatatcttcgtctaatttgtcaatctttgaacaaccagaaaggatgagagttttcactgttctcaattga |
212 |
Q |
| |
|
||||| ||| |||| |||| |||||||| ||||||||| || ||||| ||||||||||||||||||||||| |||| ||||||||| | | |||||||| |
|
|
| T |
3314920 |
aattagggttgtcaatgatttcatttgcactatatcttcttccaatttttcaatctttgaacaaccagaaagaatgaaagttttcaccgatgtcaattga |
3314821 |
T |
|
| Q |
213 |
tagatctctcttgggagattgctaagactcgtacagtccttcaaatttatcagaagaagattgttgagatctccaatggacgggtgtacctccaacagac |
312 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||| || ||||||||||||||||||| |||||| || |||| || |
|
|
| T |
3314820 |
tagatctctcttgggagatttctaagacttgtacagtccttgaaatttatcaggagaagcttcttgagatctccaatggacgagtgtacttcaaacaaac |
3314721 |
T |
|
| Q |
313 |
tttgacaatccttcataattagcttttctaggtttggtaattttgaaaagtc |
364 |
Q |
| |
|
|||||||||| |||||||| || ||||||||||| ||||||||||||||||| |
|
|
| T |
3314720 |
tttgacaatctttcataatgagattttctaggttcggtaattttgaaaagtc |
3314669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 13 - 364
Target Start/End: Original strand, 3407362 - 3407713
Alignment:
| Q |
13 |
catcatgtgataatccttcatatccacatagagatatatatccaatgctttttgatctgacgatcgaaaaaggcacttgtttgactctagtatttgctgc |
112 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||| ||| | |||||||| || ||||||||||||||||||||||| | || |||| |||| |
|
|
| T |
3407362 |
catcacgtgataatccttgatatccacatagagatatatgggtgatgttctttgatctaacaatcgaaaaaggcacttgtttgacaccagcattttctgc |
3407461 |
T |
|
| Q |
113 |
cattagagttttcaaggattccatttgcaatatatcttcgtctaatttgtcaatctttgaacaaccagaaaggatgagagttttcactgttctcaattga |
212 |
Q |
| |
|
||||||||| ||||||||| |||||||| ||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
3407462 |
aattagagttgtcaaggatttcatttgcactatatcttcttccaatttgacaatctttgaacaaccagaaaggatgagagttttcactgatctcaatcga |
3407561 |
T |
|
| Q |
213 |
tagatctctcttgggagattgctaagactcgtacagtccttcaaatttatcagaagaagattgttgagatctccaatggacgggtgtacctccaacagac |
312 |
Q |
| |
|
|||||||||||||||||||| |||||| | ||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| || | | || |
|
|
| T |
3407562 |
tagatctctcttgggagattaacaagacttgcacaatccttcaaatttatgagaagaagattcttgagatctccaatggacgggtgtatgtcggataaac |
3407661 |
T |
|
| Q |
313 |
tttgacaatccttcataattagcttttctaggtttggtaattttgaaaagtc |
364 |
Q |
| |
|
||||||||||||||||||| || |||||||| || ||||||||||||||||| |
|
|
| T |
3407662 |
tttgacaatccttcataatgagtttttctagattcggtaattttgaaaagtc |
3407713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 13 - 361
Target Start/End: Original strand, 3286554 - 3286902
Alignment:
| Q |
13 |
catcatgtgataatccttcatatccacatagagatatatatccaatgctttttgatctgacgatcgaaaaaggcacttgtttgactctagtatttgctgc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| || || ||||| ||||||| ||| || ||||| ||| |
|
|
| T |
3286554 |
catcatgtgataatccttcatatccacatagggatatatatctgatgctttttgatcttacaattgaaaagggcacttctttaacagctgtattatttgc |
3286653 |
T |
|
| Q |
113 |
cattagagttttcaaggattccatttgcaatatatcttcgtctaatttgtcaatctttgaacaaccagaaaggatgagagttttcactgttctcaattga |
212 |
Q |
| |
|
|| || ||| ||||||||||||| |||| ||| ||||| || || ||||||||||||||||||||||||||||||||||| |||| | | ||| |||| |
|
|
| T |
3286654 |
aatcagtgttgtcaaggattccatctgcactatgtcttcttccaacttgtcaatctttgaacaaccagaaaggatgagagtgttcaaagatttcagttga |
3286753 |
T |
|
| Q |
213 |
tagat-ctctcttgggagattgctaagactcgtacagtccttcaaatttatcagaagaagattgttgagatctccaatggacgggtgtacctccaacaga |
311 |
Q |
| |
|
||||| |||| |||||||||||||||||| |||||||||||||||||| || |||||| || ||||||||||||||||| ||||||||||| ||| | |
|
|
| T |
3286754 |
tagatactct-ttgggagattgctaagacctatacagtccttcaaatttaacataagaagtttattgagatctccaatggatgggtgtacctcagacaaa |
3286852 |
T |
|
| Q |
312 |
ctttgacaatccttcataattagcttttctaggtttggtaattttgaaaa |
361 |
Q |
| |
|
||| |||||||||||||||| |||||||| || ||||||||||||||||| |
|
|
| T |
3286853 |
cttggacaatccttcataatgagcttttcaagatttggtaattttgaaaa |
3286902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 124 - 364
Target Start/End: Original strand, 7164802 - 7165043
Alignment:
| Q |
124 |
tcaaggattccatttgcaatatatcttcgtctaatttgtcaatctttgaacaaccagaaaggatgagagttttcactgttctcaa-ttgatagatctctc |
222 |
Q |
| |
|
||||||||| ||| |||| ||| ||||| || || | | |||||||||||||||||||||||||||||||||||| || | |||| ||||||||| | | |
|
|
| T |
7164802 |
tcaaggatttcatctgcattatgtcttcttccaactaggcaatctttgaacaaccagaaaggatgagagttttcaatgatttcaacttgatagatattcc |
7164901 |
T |
|
| Q |
223 |
ttgggagattgctaagactcgtacagtccttcaaatttatcagaagaagattgttgagatctccaatggacgggtgtacctccaacagactttgacaatc |
322 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| || |||| ||| |||||||||||||||||| | || ||||| ||| |||| ||||||| |
|
|
| T |
7164902 |
ttgggagattgctaagacttgtacagtccttcaaatttattagtagaacattcttgagatctccaatggactgatgcacctcggacaaacttggacaatc |
7165001 |
T |
|
| Q |
323 |
cttcataattagcttttctaggtttggtaattttgaaaagtc |
364 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
7165002 |
tttcataataagcttttctagatttggtaattttgaaaagtc |
7165043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 13 - 366
Target Start/End: Original strand, 3262666 - 3263018
Alignment:
| Q |
13 |
catcatgtgataatccttcatatccacatagagatatatatccaatgctttttgatctgacgatcgaaaaaggcacttgtttgactctagtatttgctgc |
112 |
Q |
| |
|
||||| |||| |||||| ||||||||||||| |||||||||||||||||||||||||| || || ||| | ||||| | ||| || | |||| ||| |
|
|
| T |
3262666 |
catcacgtgaaaatcct-catatccacatagggatatatatccaatgctttttgatcttactattgaatagggcacctctttcacacctgtatcctttgc |
3262764 |
T |
|
| Q |
113 |
cattagagttttcaaggattccatttgcaatatatcttcgtctaatttgtcaatctttgaacaaccagaaaggatgagagttttcactgttctcaattga |
212 |
Q |
| |
|
|| || ||| ||||||||||||| |||| ||| ||||| || ||||||||||||||||| ||||||||||| ||||||||||||| | | ||||||| |
|
|
| T |
3262765 |
aatcagtgttgtcaaggattccatctgcactatgtcttcttccaatttgtcaatctttgagcaaccagaaagtatgagagttttcaaagatttcaattgg |
3262864 |
T |
|
| Q |
213 |
tagatctctcttgggagattgctaagactcgtacagtccttcaaatttatcagaagaagattgttgagatctccaatggacgggtgtacctccaacagac |
312 |
Q |
| |
|
|| || | |||||||||| |||||| ||||||||||||||||||||| | ||||| |||||||||||||||||| ||||||||| ||| | |
|
|
| T |
3262865 |
tatatattctttgggagattttgaagacttctacagtccttcaaatttatcatatgaagacgattgagatctccaatggactggtgtaccttagacaagc |
3262964 |
T |
|
| Q |
313 |
tttgacaatccttcataattagcttttctaggtttggtaattttgaaaagtctg |
366 |
Q |
| |
|
| |||||| |||||| || ||||||||||| || ||| ||||||||||||||| |
|
|
| T |
3262965 |
atggacaattcttcatgatgagcttttctagattcggtgattttgaaaagtctg |
3263018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 20 - 364
Target Start/End: Original strand, 3267244 - 3267588
Alignment:
| Q |
20 |
tgataatccttcatatccacatagagatatatatccaatgctttttgatctgacgatcgaaaaaggcacttgtttgactctagtatttgctgccattaga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||| || | ||| | ||||| | ||| || | |||| | | | || |
|
|
| T |
3267244 |
tgataatccttcatatccacatagagatatatatccgatgcttttcaatcttaccactgaatacggcacctctttcacacctgtatcttttatgaccagt |
3267343 |
T |
|
| Q |
120 |
gttttcaaggattccatttgcaatatatcttcgtctaatttgtcaatctttgaacaaccagaaaggatgagagttttcactgttctcaattgatagatct |
219 |
Q |
| |
|
||| | ||||||||||| |||| ||| |||| ||||| ||||||||||||||||||||||||| |||||||||| ||| | ||||||||| |||| |
|
|
| T |
3267344 |
gttgttaaggattccatctgcactatgccttcttctaacttgtcaatctttgaacaaccagaaatgatgagagttgtcaaagacttcaattgatttatct |
3267443 |
T |
|
| Q |
220 |
ctcttgggagattgctaagactcgtacagtccttcaaatttatcagaagaagattgttgagatctccaatggacgggtgtacctccaacagactttgaca |
319 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||||||||||||||||||||| | ||| | ||||| ||| |||||||||| ||| ||| |||| |
|
|
| T |
3267444 |
tctttgggagattgctaagacttgtacaatctttcaaatttatcagaagaagattcctcagacccccaattgactggtgtacctcagacaagcttggaca |
3267543 |
T |
|
| Q |
320 |
atccttcataattagcttttctaggtttggtaattttgaaaagtc |
364 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
3267544 |
gtccttcataatgagcttttctagattcggtaattttgaaaagtc |
3267588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 358
Target Start/End: Original strand, 3325039 - 3325384
Alignment:
| Q |
13 |
catcatgtgataatccttcatatccacatagagatatatatccaatgctttttgatctgacgatcgaaaaaggcacttgtttgactctagtatttgctgc |
112 |
Q |
| |
|
|||| ||||||| ||||||||||||||| || ||||||||||||||||||||| |||| | || ||| |||| |||||||| || |||| | || |
|
|
| T |
3325039 |
catcgtgtgatagtccttcatatccacagagggatatatatccaatgctttttaatcttagtattgaataaggaacttgttttacagatgtatctttagc |
3325138 |
T |
|
| Q |
113 |
cattagagttttcaaggattccatttgcaatatatcttcgtctaatttgtcaatctttgaacaaccagaaaggatgagagttttcactgttctcaattga |
212 |
Q |
| |
|
|| || ||| ||||||||||||| ||| | | |||| || || ||||||||||||||||||||||| | || ||||||| || | | |||||||| |
|
|
| T |
3325139 |
aatcagcgttgtcaaggattccatctgcccgaaaccttcttccaacttgtcaatctttgaacaaccagataatataagagtttccaaagatttcaattga |
3325238 |
T |
|
| Q |
213 |
tagatctctcttgggagattgctaagactcgtacagtccttcaaatttatcagaagaagattgttgagatctccaatggacgggtgtacctccaacagac |
312 |
Q |
| |
|
|||||||| | ||||||||| |||||||| | ||||||||||||||| | || |||||| || |||||||||||||||||| ||| ||||| |||| | |
|
|
| T |
3325239 |
tagatctcccctgggagatttctaagacttgcacagtccttcaaattcaacaaaagaaggttcttgagatctccaatggactggtccacctcgaacaaat |
3325338 |
T |
|
| Q |
313 |
tttgacaatccttcataattagcttttctaggtttggtaattttga |
358 |
Q |
| |
|
| ||||| |||||| || ||||||||||| || ||||||||||| |
|
|
| T |
3325339 |
tggaacaattcttcattataagcttttctagattcggtaattttga |
3325384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 124 - 361
Target Start/End: Complemental strand, 3375129 - 3374892
Alignment:
| Q |
124 |
tcaaggattccatttgcaatatatcttcgtctaatttgtcaatctttgaacaaccagaaaggatgagagttttcactgttctcaattgatagatctctct |
223 |
Q |
| |
|
||||||||||||| |||| ||| ||||| || || |||| ||||||||||||||||||||| || |||||||||| | |||| ||||||||| | || |
|
|
| T |
3375129 |
tcaaggattccatctgcattatgtcttcttccaacttgttaatctttgaacaaccagaaagtataagagttttcaaaagtttcaaatgatagatcaccct |
3375030 |
T |
|
| Q |
224 |
tgggagattgctaagactcgtacagtccttcaaatttatcagaagaagattgttgagatctccaatggacgggtgtacctccaacagactttgacaatcc |
323 |
Q |
| |
|
|||||||||| ||||||| |||||||| || ||||| | |||||| ||||| | || |||||||||||| |||||||||| ||| || | || ||| | |
|
|
| T |
3375029 |
tgggagattggtaagacttgtacagtctttgaaattcaacagaagtagattcctaaggtctccaatggactggtgtacctcatacaaacatggataattc |
3374930 |
T |
|
| Q |
324 |
ttcataattagcttttctaggtttggtaattttgaaaa |
361 |
Q |
| |
|
|||||||| || |||||||| || |||||||||||||| |
|
|
| T |
3374929 |
ttcataataagtttttctagattcggtaattttgaaaa |
3374892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 124 - 366
Target Start/End: Complemental strand, 13808756 - 13808514
Alignment:
| Q |
124 |
tcaaggattccatttgcaatatatcttcgtctaatttgtcaatctttgaacaaccagaaaggatgagagttttcactgttctcaattgatagatctctct |
223 |
Q |
| |
|
||||||||||||| || | ||| ||||| || || ||||||||||||||||||||||||| ||| |||||||||| || | |||| ||||| ||| | |
|
|
| T |
13808756 |
tcaaggattccatctggactatgtcttcttccaacttgtcaatctttgaacaaccagaaaagattagagttttcaatgatttcaactgatatatcacctc |
13808657 |
T |
|
| Q |
224 |
tgggagattgctaagactcgtacagtccttcaaatttatcagaagaagattgttgagatctccaatggacgggtgtacctccaacagactttgacaatcc |
323 |
Q |
| |
|
||||||| || |||||| ||||||||||||| ||| | ||| |||| ||| |||||||| ||||| || |||||| || ||| || |||| | | |
|
|
| T |
13808656 |
tgggagactggcaagacttgtacagtccttcagattgagcagtagaatattcttgagatccccaatcgagtggtgtaacttggacaagtttggacagttc |
13808557 |
T |
|
| Q |
324 |
ttcataattagcttttctaggtttggtaattttgaaaagtctg |
366 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
13808556 |
ttcataatgagcttttctagatttggtaattttgaaaagtctg |
13808514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 231 - 366
Target Start/End: Complemental strand, 13787390 - 13787255
Alignment:
| Q |
231 |
ttgctaagactcgtacagtccttcaaatttatcagaagaagattgttgagatctccaatggacgggtgtacctccaacagactttgacaatccttcataa |
330 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||| ||| ||| ||||||||||||||||| ||||||| ||| ||| || | ||||||| ||||| | |
|
|
| T |
13787390 |
ttgctaagacttatacagttcttcaaatttatcagatgaatattattgagatctccaatggaagggtgtatctcagacaaacatggacaatcgttcatga |
13787291 |
T |
|
| Q |
331 |
ttagcttttctaggtttggtaattttgaaaagtctg |
366 |
Q |
| |
|
| |||||||| || || ||||||||||||||||||| |
|
|
| T |
13787290 |
tgagcttttcaagattgggtaattttgaaaagtctg |
13787255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 7164699 - 7164748
Alignment:
| Q |
21 |
gataatccttcatatccacatagagatatatatccaatgctttttgatct |
70 |
Q |
| |
|
||||| |||||||||| |||||| |||| |||||||||||||||||||| |
|
|
| T |
7164699 |
gataacccttcatatctacatagggataagtatccaatgctttttgatct |
7164748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 14 - 364
Target Start/End: Original strand, 6905846 - 6906196
Alignment:
| Q |
14 |
atcatgtgataatccttcatatccacatagagatatatatccaatgctttttgatctgacgatcgaaaaaggcacttgtttgactctagtatttgctgcc |
113 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| |||||||| |||||||||||||||| || || ||||| || |||||||||| | |||||||||||| |
|
|
| T |
6905846 |
atcacgtgataatccttcatatccgcatagggatatatacacaatgctttttgatctaacaatggaaaagggtgcttgtttgacgccagtatttgctgca |
6905945 |
T |
|
| Q |
114 |
attagagttttcaaggattccatttgcaatatatcttcgtctaatttgtcaatctttgaacaaccagaaaggatgagagttttcactgttctcaattgat |
213 |
Q |
| |
|
| ||||||| ||||||||| |||||||| ||||||||| || |||||||||||||||||||||||| |||| |||||||||||||| | | ||| |||| |
|
|
| T |
6905946 |
actagagttgtcaaggatttcatttgcactatatcttcctccaatttgtcaatctttgaacaaccaaaaagaatgagagttttcacagatatcagctgat |
6906045 |
T |
|
| Q |
214 |
agatctctcttgggagattgctaagactcgtacagtccttcaaatttatcagaagaagattgttgagatctccaatggacgggtgtacctccaacagact |
313 |
Q |
| |
|
||||||| ||||| ||||||| |||||| ||||||||||||||||||||||||||||| || |||||| |||||||||||||||||| ||| ||| ||| |
|
|
| T |
6906046 |
agatctcccttggtagattgccaagacttgtacagtccttcaaatttatcagaagaagcttcttgagaactccaatggacgggtgtatctcggacaaact |
6906145 |
T |
|
| Q |
314 |
ttgacaatccttcataattagcttttctaggtttggtaattttgaaaagtc |
364 |
Q |
| |
|
| |||||||||||||||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
6906146 |
tggacaatccttcataatgagcttttctagattcggtaattttgaaaagtc |
6906196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 15 - 300
Target Start/End: Original strand, 32411124 - 32411406
Alignment:
| Q |
15 |
tcatgtgataatccttcatatccacatagagatatatatccaatgctttttgatctgacgatcgaaaaaggcacttgtttgactctagtatttgctgcca |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| || || ||| | ||||| | ||| || | |||| | ||| | |
|
|
| T |
32411124 |
tcatgtgataatccttcatatccacatagagatatatatgcgatgcttttcgatcttactattgaacagggcacctcttttacacctgtatcttttgcaa |
32411223 |
T |
|
| Q |
115 |
ttagagttttcaaggattccatttgcaatatatcttcgtctaatttgtcaatctttgaacaaccagaaaggatgagagttttcactgttctcaattgata |
214 |
Q |
| |
|
| || ||| |||| ||||||||||||| ||| ||||| || || ||||||||||||||||||||||||||||||||||||| | | |||||||||| |
|
|
| T |
32411224 |
tcagtgttgtcaacgattccatttgcactatttcttcc---aagttttcaatctttgaacaaccagaaaggatgagagttttcaaagatttcaattgata |
32411320 |
T |
|
| Q |
215 |
gatctctcttgggagattgctaagactcgtacagtccttcaaatttatcagaagaagattgttgagatctccaatggacgggtgta |
300 |
Q |
| |
|
|||| |||||||| || ||||||| |||||||||||||||||||||||||||||| | ||||||| |||||||||| |||||| |
|
|
| T |
32411321 |
tatcttctttgggagactgttaagacttgtacagtccttcaaatttatcagaagaagactattgagatttccaatggactggtgta |
32411406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0468 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: scaffold0468
Description:
Target: scaffold0468; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 13 - 364
Target Start/End: Original strand, 6185 - 6536
Alignment:
| Q |
13 |
catcatgtgataatccttcatatccacatagagatatatatccaatgctttttgatctgacgatcgaaaaaggcacttgtttgactctagtatttgctgc |
112 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| |||||||| |||||||||||||||| | || ||||| || ||||||||| | |||||||||||| |
|
|
| T |
6185 |
catcacgtgataatccttcatatccgcatagggatatatacacaatgctttttgatctaaatatggaaaagggtgcttgtttgatgccagtatttgctgc |
6284 |
T |
|
| Q |
113 |
cattagagttttcaaggattccatttgcaatatatcttcgtctaatttgtcaatctttgaacaaccagaaaggatgagagttttcactgttctcaattga |
212 |
Q |
| |
|
| || ||| |||| |||| |||||||| ||||||||| || |||||||| ||||||||||||||| ||||||| ||||||||||| | | ||| ||| |
|
|
| T |
6285 |
aactaaagtcgtcaaagatttcatttgcactatatcttcttccaatttgtcgatctttgaacaaccaaaaaggataagagttttcacagatatcagctga |
6384 |
T |
|
| Q |
213 |
tagatctctcttgggagattgctaagactcgtacagtccttcaaatttatcagaagaagattgttgagatctccaatggacgggtgtacctccaacagac |
312 |
Q |
| |
|
|||||||| ||||| ||||||| |||||| ||||| ||||||||||| |||||||||| ||| ||||| |||| ||||||||||||||||| ||| || |
|
|
| T |
6385 |
tagatctcccttggtagattgccaagacttgtacaatccttcaaattaatcagaagaatattcttgagcactcctatggacgggtgtacctcggacaaac |
6484 |
T |
|
| Q |
313 |
tttgacaatccttcataattagcttttctaggtttggtaattttgaaaagtc |
364 |
Q |
| |
|
|| |||||||||||||||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
6485 |
ttggacaatccttcataatgagcttttctagattcggtaattttgaaaagtc |
6536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 14 - 364
Target Start/End: Original strand, 14766987 - 14767337
Alignment:
| Q |
14 |
atcatgtgataatccttcatatccacatagagatatatatccaatgctttttgatctgacgatcgaaaaaggcacttgtttgactctagtatttgctgcc |
113 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||||||||||||||||||| |||| | || ||| | || |||| ||| | ||||||| ||| |
|
|
| T |
14766987 |
atcatgcgataatccttcataaccacatagggatatatatccaatgctttttaatcttagtattgaatatggaacttcttttatagatgtatttgttgca |
14767086 |
T |
|
| Q |
114 |
attagagttttcaaggattccatttgcaatatatcttcgtctaatttgtcaatctttgaacaaccagaaaggatgagagttttcactgttctcaattgat |
213 |
Q |
| |
|
|| || | | |||||||||||||||||| |||||||| || |||||||||||||||||||| || ||||||||||||||||||| | | ||||||||| |
|
|
| T |
14767087 |
atcagtgatgtcaaggattccatttgcacaatatcttcttccaatttgtcaatctttgaacagccggaaaggatgagagttttcaaagatttcaattgat |
14767186 |
T |
|
| Q |
214 |
agatctctcttgggagattgctaagactcgtacagtccttcaaatttatcagaagaagattgttgagatctccaatggacgggtgtacctccaacagact |
313 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||| | ||||| | | | ||| |
|
|
| T |
14767187 |
agatctctcttgggagattttcaagacttgtacagtccttcaaatttatgagaagaacattcttgagatctccaatggactgatgtacgttggataaact |
14767286 |
T |
|
| Q |
314 |
ttgacaatccttcataattagcttttctaggtttggtaattttgaaaagtc |
364 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
14767287 |
ttgacaatccttcataatgagcttttctagatttggtaattttgaaaagtc |
14767337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 124 - 364
Target Start/End: Original strand, 8371809 - 8372049
Alignment:
| Q |
124 |
tcaaggattccatttgcaatatatcttcgtctaatttgtcaatctttgaacaaccagaaaggatgagagttttcactgttctcaattgatagatctctct |
223 |
Q |
| |
|
||||||| ||||| |||| ||||||||| || |||||||||||| ||||||| || | |||||||||||||||||| | | ||||||||||||||||||| |
|
|
| T |
8371809 |
tcaaggactccatctgcactatatcttcttccaatttgtcaatcgttgaacagcccgtaaggatgagagttttcaccgatttcaattgatagatctctct |
8371908 |
T |
|
| Q |
224 |
tgggagattgctaagactcgtacagtccttcaaatttatcagaagaagattgttgagatctccaatggacgggtgtacctccaacagactttgacaatcc |
323 |
Q |
| |
|
||||||||| |||| | |||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
8371909 |
tgggagattttcaagaattatacagtcctttaaatttatgagaagaagattcttgagatctccaatggacgggtgtacgttggacagactttgacaatcc |
8372008 |
T |
|
| Q |
324 |
ttcataattagcttttctaggtttggtaattttgaaaagtc |
364 |
Q |
| |
|
||||||| ||||||||| || |||||||||||||||||||| |
|
|
| T |
8372009 |
ttcataactagcttttccagatttggtaattttgaaaagtc |
8372049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 36213891 - 36213931
Alignment:
| Q |
156 |
aatttgtcaatctttgaacaaccagaaaggatgagagtttt |
196 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
36213891 |
aatttgtcaatctttgaacatccagaaagaatgagagtttt |
36213931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 5102533 - 5102587
Alignment:
| Q |
13 |
catcatgtgataatccttcatatccacatagagatatatatccaatgctttttga |
67 |
Q |
| |
|
|||||||||| | ||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
5102533 |
catcatgtgaaagtccttcatagccacatagagagatatatccaatgctttttga |
5102587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 5345017 - 5344969
Alignment:
| Q |
19 |
gtgataatccttcatatccacatagagatatatatccaatgctttttga |
67 |
Q |
| |
|
|||| ||||||||||| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
5345017 |
gtgagaatccttcatagccacacagagaaatatatccaatgctttttga |
5344969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 5354533 - 5354584
Alignment:
| Q |
13 |
catcatgtgataatccttcatatccacatagagatatatatccaatgctttt |
64 |
Q |
| |
|
||||| |||| ||||||||||| ||||||| ||| ||||||||||||||||| |
|
|
| T |
5354533 |
catcacgtgagaatccttcatagccacataaagaaatatatccaatgctttt |
5354584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 198
Target Start/End: Complemental strand, 5447603 - 5447564
Alignment:
| Q |
159 |
ttgtcaatctttgaacaaccagaaaggatgagagttttca |
198 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
5447603 |
ttgtcaatctttaaacaaccagaaagaatgagagttttca |
5447564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 5096870 - 5096816
Alignment:
| Q |
13 |
catcatgtgataatccttcatatccacatagagatatatatccaatgctttttga |
67 |
Q |
| |
|
||||| |||| |||||||||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
5096870 |
catcacgtgaaaatccttcatggccacatagagaaatgtatccaatgctttttga |
5096816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 5434192 - 5434140
Alignment:
| Q |
18 |
tgtgataatccttcatatccacatagagatatatatccaatgctttttgatct |
70 |
Q |
| |
|
||||| ||||||||||| || || | ||| ||||||||||||||||||||||| |
|
|
| T |
5434192 |
tgtgagaatccttcataaccgcacaaagagatatatccaatgctttttgatct |
5434140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 4123869 - 4123935
Alignment:
| Q |
24 |
aatccttcatatccacatagagatatatatccaatgctttttgatctgacgatcgaaaaaggcactt |
90 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||||||||||||| || || | |||||| ||||||| |
|
|
| T |
4123869 |
aatccttcatatccacacagagaaataaatccaatgctttttgaccttactaccgaaaagggcactt |
4123935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 4320538 - 4320592
Alignment:
| Q |
13 |
catcatgtgataatccttcatatccacatagagatatatatccaatgctttttga |
67 |
Q |
| |
|
||||| |||| ||||||||||||||||| ||||| ||| |||||||||||||||| |
|
|
| T |
4320538 |
catcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttga |
4320592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 4361239 - 4361182
Alignment:
| Q |
13 |
catcatgtgataatccttcatatccacatagagatatatatccaatgctttttgatct |
70 |
Q |
| |
|
||||| |||| ||||||||||||||||| | ||| ||| ||||||||| ||||||||| |
|
|
| T |
4361239 |
catcacgtgagaatccttcatatccacacaaagaaataaatccaatgcgttttgatct |
4361182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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