View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20147_low_21 (Length: 354)
Name: NF20147_low_21
Description: NF20147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20147_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 340
Target Start/End: Original strand, 15887921 - 15888248
Alignment:
| Q |
13 |
tagggtttacaatactcacacaccttacgcaccagtcgcttgtgctagatttcggtggtaacattgtcgatctggatagtgttggccataatttagtcca |
112 |
Q |
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| T |
15887921 |
tagggtttacaatactcacacaccttacgcaccagccgcttgtgctagatttcggtggtaacattgtcgatctggatagtgttggtcataatttagtcca |
15888020 |
T |
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| Q |
113 |
tctggattcatatgaatgaagtaattttgaaatcaggaacggttgatgttcttaggttatgaaaaaaccatttactcgattatctcaagtggaggaaacc |
212 |
Q |
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| T |
15888021 |
tctggattcatatgaatgaagtaattttgaaatcaggaacggttgatgttcttaggttatgaaaaaaccatttactcgattatctcaagtggaggaaacc |
15888120 |
T |
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| Q |
213 |
tatgaaaaactaaaggagaatactgcataattagatagataatgtcattttacaatgtcactgacatttagattgtaaaaatatcattctcactttcaat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
15888121 |
tatgaaaaactaaaggagaatactgcataattagatagataatgtcattttacaatgtcactgacatttagattgtaaaaatatcaatctcactttcaat |
15888220 |
T |
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| Q |
313 |
ttctgatcatgatcttttatgaaatttt |
340 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
15888221 |
ttctgatcatgatcttttatgaaatttt |
15888248 |
T |
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