View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20147_low_22 (Length: 334)

Name: NF20147_low_22
Description: NF20147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20147_low_22
NF20147_low_22
[»] chr1 (6 HSPs)
chr1 (1-333)||(15499520-15499850)
chr1 (185-274)||(15247567-15247656)
chr1 (60-288)||(17493677-17493900)
chr1 (58-130)||(44323174-44323246)
chr1 (210-288)||(28639629-28639707)
chr1 (1-73)||(15247402-15247474)
[»] chr3 (6 HSPs)
chr3 (60-283)||(49442275-49442493)
chr3 (93-278)||(25227863-25228044)
chr3 (219-288)||(12717981-12718050)
chr3 (219-276)||(36337893-36337950)
chr3 (211-243)||(27024676-27024708)
chr3 (211-243)||(27035932-27035964)
[»] chr7 (7 HSPs)
chr7 (61-239)||(18043210-18043384)
chr7 (10-225)||(25879653-25879865)
chr7 (181-276)||(2669485-2669580)
chr7 (210-288)||(18500714-18500792)
chr7 (211-278)||(1852529-1852596)
chr7 (167-271)||(48374838-48374939)
chr7 (212-288)||(1377730-1377806)
[»] chr6 (2 HSPs)
chr6 (148-281)||(32428078-32428208)
chr6 (211-276)||(20818904-20818969)
[»] chr5 (4 HSPs)
chr5 (147-267)||(13909673-13909791)
chr5 (218-288)||(17133570-17133640)
chr5 (210-288)||(10134550-10134628)
chr5 (211-252)||(27495526-27495567)
[»] chr2 (3 HSPs)
chr2 (222-288)||(32474843-32474909)
chr2 (147-206)||(32474780-32474839)
chr2 (210-288)||(815965-816043)
[»] scaffold0050 (1 HSPs)
scaffold0050 (148-281)||(77693-77823)
[»] chr4 (2 HSPs)
chr4 (158-273)||(7631475-7631587)
chr4 (182-252)||(20183146-20183216)
[»] scaffold0016 (1 HSPs)
scaffold0016 (210-271)||(109907-109968)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 15499520 - 15499850
Alignment:
Q  1 aacgccacaatccacagtctgtgatggttcatattatatatgcaaaaatcctgagtgacatttcagattatataatctgaattgtccctgattgtgttta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||    
T  15499520 aacgccacaatccacagtctgtgatggttcatattatatatgcaaaaatcctcagtgacatttcagattatataatctgaactgtccctgactgtgttta 15499619  T
Q  101 accttgacctttggaggtttttcatggtgagtaactcggnnnnnnn-gtaaacgacacaattcaacaacgtaaaacaacataataataagagaagtgatg 199  Q
    ||||||||||||||||||||||||||||||||||| |||        ||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  15499620 accttgacctttggaggtttttcatggtgagtaacgcggaaaaaaaagtaaacgacacaattcaacaacgtaaaacaacataa---taagagaagtgatg 15499716  T
Q  200 atgaaagactaggtgttccaagaggtgtttttgaacttgatccagctgacctgtcagttgacatatttctatcggcagggcaattggatatctttgaaag 299  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15499717 atgaaagactaggtgtttcaagaggtgtttttgaacttgatccagctgacctgtcagttgacatatttctatcggcaaggcaattggatatctttgaaag 15499816  T
Q  300 atctcacaaatgaaacattcaactctatcagacc 333  Q
    |||| |||||||||||||||||||||||||||||    
T  15499817 atctgacaaatgaaacattcaactctatcagacc 15499850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 274
Target Start/End: Original strand, 15247567 - 15247656
Alignment:
Q  185 ataagagaagtgatgatgaaagactaggtgttccaagaggtgtttttgaacttgatccagctgacctgtcagttgacatatttctatcgg 274  Q
    |||||| |||||||||||||||   || |||||||||| ||||||||||||||||||||||||||||  ||   ||||||||||||||||    
T  15247567 ataagataagtgatgatgaaaggaaagttgttccaagatgtgtttttgaacttgatccagctgaccttccaaccgacatatttctatcgg 15247656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 288
Target Start/End: Original strand, 17493677 - 17493900
Alignment:
Q  60 atttcagattatataatctgaattgtccctgattgtgtttaaccttgacctttggaggtttttcatggtgagtaactcggnnnnnnngtaaacgacacaa 159  Q
    ||||| |||||| ||||||||||||||||  ||||||||||||||||| | |||||||||||| ||||| | |||| | |       |||||||||| |     
T  17493677 atttcggattatgtaatctgaattgtcccatattgtgtttaaccttgatc-ttggaggtttttaatggtaaataacacaggaagaaagtaaacgacatag 17493775  T
Q  160 ttcaacaacgtaaaacaacataataataagagaagtgatgatgaaagactaggtgttccaagaggtgtttttgaacttgatccagctgacctgtcagttg 259  Q
    ||||  | |||||||||||   ||| ||| ||| |||||||||||||   | |||||  ||||||| | ||||||||||||||||||  ||  |||   |    
T  17493776 ttcagaagcgtaaaacaac---atattaaaagatgtgatgatgaaagggaatgtgttataagaggt-tgtttgaacttgatccagctagccgatcaaccg 17493871  T
Q  260 acatatttctatcggcagggcaattggat 288  Q
    ||||||||||||||| || |||| |||||    
T  17493872 acatatttctatcggaagagcaactggat 17493900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 44323246 - 44323174
Alignment:
Q  58 acatttcagattatataatctgaattgtccctgattgtgtttaaccttgacctttggaggtttttcatggtga 130  Q
    |||||||||||||||||||||||| ||||||  | ||||| ||| ||||| | ||||||| || |||||||||    
T  44323246 acatttcagattatataatctgaactgtcccaaactgtgtataagcttgatcattggagggttctcatggtga 44323174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 288
Target Start/End: Complemental strand, 28639707 - 28639629
Alignment:
Q  210 aggtgttccaagaggtgtttttgaacttgatccagctgacctgtcagttgacatatttctatcggcagggcaattggat 288  Q
    ||||| || |||||||| ||||| |||||||||||||| | || ||| ||||||||||||||  ||||| ||| |||||    
T  28639707 aggtgctcaaagaggtgcttttgtacttgatccagctggcttgccagctgacatatttctatttgcaggtcaactggat 28639629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 15247402 - 15247474
Alignment:
Q  1 aacgccacaatccacagtctgtgatggttcatattatatatgcaaaaatcctgagtgacatttcagattatat 73  Q
    |||||||  |||||||||||| ||||||||| ||||||||||  ||||| || |||  |||||| ||||||||    
T  15247402 aacgccaacatccacagtctgagatggttcagattatatatgtcaaaattctcagtaccatttcggattatat 15247474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 60 - 283
Target Start/End: Original strand, 49442275 - 49442493
Alignment:
Q  60 atttcagattatataatctgaattgtccctgattgtgtttaaccttgacctttggaggtttttcatggtgagtaactcggnnnnnnngtaaacgacacaa 159  Q
    ||||||| || |||||||| |||||||||  | ||| ||||||||| | ||||||||| |||||||||||| |||| |||       |||||||||| ||    
T  49442275 atttcagtttgtataatctaaattgtcccaaactgtatttaaccttcatctttggaggcttttcatggtgaataacacggaaaaaa-gtaaacgacataa 49442373  T
Q  160 ttcaacaacgtaaaacaacataataataagagaagtgatgatgaaagactaggtgttccaagaggtgtttttgaacttgatccagctgacctgtcagttg 259  Q
    |||||||||||||||||||   ||||||||||||||| |||||||||   ||||  || ||||||| ||||||| |||||||  | || | |||||  ||    
T  49442374 ttcaacaacgtaaaacaac---ataataagagaagtggtgatgaaag-gaaggtaatctaagaggtctttttgagcttgatcatgatgtcttgtcaactg 49442469  T
Q  260 acatatttctatcggcagggcaat 283  Q
    |||||||||||| | |||||||||    
T  49442470 acatatttctattgtcagggcaat 49442493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 93 - 278
Target Start/End: Complemental strand, 25228044 - 25227863
Alignment:
Q  93 tgtgtttaaccttgacctttggaggtttttcatggtgagtaactcggnnnnnnngtaaacgacacaattcaacaacgtaaaacaacataataataagaga 192  Q
    ||||||||| ||||| ||||||| |||||||||||||| |||| |         |||||||||| ||||||| |  ||||||||||||||||    || |    
T  25228044 tgtgtttaagcttgatctttggaagtttttcatggtgaataacaca-agaaaaagtaaacgacataattcaatagtgtaaaacaacataatag---gata 25227949  T
Q  193 agtgatgatgaaagactaggtgttccaagaggtgtttttgaacttgatccagctgacctgtcagttgacatatttctatcggcagg 278  Q
    || ||||||| ||||  ||||||| ||||||||||||||||||||||||||   || |||| || |||||||||||||||||||||    
T  25227948 agggatgatgtaagagaaggtgtttcaagaggtgtttttgaacttgatccaatcgatctgtgagctgacatatttctatcggcagg 25227863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 12717981 - 12718050
Alignment:
Q  219 aagaggtgtttttgaacttgatccagctgacctgtcagttgacatatttctatcggcagggcaattggat 288  Q
    |||||||| ||||||||| |||||| |||||||| ||  ||||||||||||||| ||||| ||| |||||    
T  12717981 aagaggtgcttttgaactcgatccaactgacctgccaactgacatatttctatcagcaggccaactggat 12718050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 36337893 - 36337950
Alignment:
Q  219 aagaggtgtttttgaacttgatccagctgacctgtcagttgacatatttctatcggca 276  Q
    |||||||| ||||| |||||||||| |||||||||||   |||||||||| |||||||    
T  36337893 aagaggtgcttttgtacttgatccaactgacctgtcaaccgacatatttcgatcggca 36337950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 27024676 - 27024708
Alignment:
Q  211 ggtgttccaagaggtgtttttgaacttgatcca 243  Q
    ||||||| |||||||||||||||||||||||||    
T  27024676 ggtgttcgaagaggtgtttttgaacttgatcca 27024708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 27035932 - 27035964
Alignment:
Q  211 ggtgttccaagaggtgtttttgaacttgatcca 243  Q
    ||||||| |||||||||||||||||||||||||    
T  27035932 ggtgttcgaagaggtgtttttgaacttgatcca 27035964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 239
Target Start/End: Original strand, 18043210 - 18043384
Alignment:
Q  61 tttcagattatataatctgaattgtccctgattgtgtttaaccttgacctttggaggtttttcatggtgagtaactcggnnnnnnngtaaacgacacaat 160  Q
    ||||||||||| |||||  || | |||| |||||||||||||||||| ||||||||| ||| |||||||| || |  ||       |||||||||| |||    
T  18043210 tttcagattatttaatcctaactctcccagattgtgtttaaccttgatctttggaggatttacatggtgaatagcaaggaaaata-gtaaacgacataat 18043308  T
Q  161 tcaacaacgtaaaacaacataataataagagaagtgatgatgaaagactaggtgttccaagaggtgtttttgaacttga 239  Q
    |||||||| |||||||||||||||  |   |||||| ||||||||||  ||||||| ||||||||||||||||||||||    
T  18043309 tcaacaacctaaaacaacataatagaa---gaagtggtgatgaaagagaaggtgtttcaagaggtgtttttgaacttga 18043384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 25879653 - 25879865
Alignment:
Q  10 atccacagtctgtgatggttcatattatatatgcaaaaatcctgagtgacatttcagattatataatctgaattgtccctgattgtgtttaaccttgacc 109  Q
    |||||||||||| |||||||   |||||||||||  |||  || ||  ||||||||||||||||||| |||| ||| || || | |||||||||||| |     
T  25879653 atccacagtctgggatggtttggattatatatgctgaaagtctcagcaacatttcagattatataatttgaactgttccggactatgtttaaccttggca 25879752  T
Q  110 tttggaggtttttcatggtgagtaactcggnnnnnnngtaaacgacacaattcaacaacgtaaaacaacataataataagagaagtgatgatgaaagact 209  Q
    |||| ||||||| |||||| | |||| |         |||||||||| ||||||||  |||||| ||||   ||||||||||||||||||||||||||      
T  25879753 tttgcaggttttacatggtaaataacgcattgaaaaagtaaacgacataattcaacggcgtaaagcaac---ataataagagaagtgatgatgaaagaga 25879849  T
Q  210 aggtgttccaagaggt 225  Q
    | |||||| |||||||    
T  25879850 atgtgttctaagaggt 25879865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 276
Target Start/End: Original strand, 2669485 - 2669580
Alignment:
Q  181 aataataagagaagtgatgatgaaagactaggtgttccaagaggtgtttttgaacttgatccagctgacctgtcagttgacatatttctatcggca 276  Q
    |||||||||| || ||||||||||||   |||||||||||||| ||||||| |||||||  |||||  ||||||||||| ||||||||||| ||||    
T  2669485 aataataagataaatgatgatgaaagggaaggtgttccaagagctgtttttcaacttgactcagctaccctgtcagttgtcatatttctattggca 2669580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 18500714 - 18500792
Alignment:
Q  210 aggtgttccaagaggtgtttttgaacttgatccagctgacctgtcagttgacatatttctatcggcagggcaattggat 288  Q
    |||||||| |||||||  ||||| |||||||||||||| |||||||  ||||||||||| ||||||||| ||| |||||    
T  18500714 aggtgttcgaagaggttcttttgtacttgatccagctggcctgtcaactgacatatttcgatcggcaggtcaactggat 18500792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 1852529 - 1852596
Alignment:
Q  211 ggtgttccaagaggtgtttttgaacttgatccagctgacctgtcagttgacatatttctatcggcagg 278  Q
    ||||||| |||||||||||||||||| |||| ||||| |||| ||  |||||||||| ||||||||||    
T  1852529 ggtgttcgaagaggtgtttttgaactcgatctagctggcctgccaactgacatatttatatcggcagg 1852596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 271
Target Start/End: Original strand, 48374838 - 48374939
Alignment:
Q  167 acgtaaaacaacataataataagagaagtgatgatgaaagactaggtgttccaagaggtgtttttgaacttgatccagctgacctgtcagttgacatatt 266  Q
    |||||||||||||||||||||   |||||| |||||||||   |||||||| |||| ||| ||||  |||||||||||||| |||  ||  |||||||||    
T  48374838 acgtaaaacaacataataata---gaagtggtgatgaaagggaaggtgttcgaagatgtgattttctacttgatccagctgccctaccaactgacatatt 48374934  T
Q  267 tctat 271  Q
    |||||    
T  48374935 tctat 48374939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 288
Target Start/End: Original strand, 1377730 - 1377806
Alignment:
Q  212 gtgttccaagaggtgtttttgaacttgatccagctgacctgtcagttgacatatttctatcggcagggcaattggat 288  Q
    |||||| ||| |||| ||||||||| |||| ||||| |||| ||  ||||||||||||||||| ||| ||| |||||    
T  1377730 gtgttctaagtggtgcttttgaactcgatctagctggcctgccaactgacatatttctatcggaaggccaactggat 1377806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 281
Target Start/End: Complemental strand, 32428208 - 32428078
Alignment:
Q  148 taaacgacacaattcaacaacgtaaaacaacataataataagagaagtgatgatgaaagactaggtgttccaagaggtgtttttgaacttgatccagctg 247  Q
    ||||||||| ||||||| | |||||||||||||||||    || || || |||||||||   ||||||| |||||||||||||||||||||||||| |||    
T  32428208 taaacgacataattcaaaagcgtaaaacaacataatat---gataaatggtgatgaaagggaaggtgtttcaagaggtgtttttgaacttgatccaactg 32428112  T
Q  248 acctgtcagttgacatatttctatcggcagggca 281  Q
     | |||||  |||||||||||||| | |||||||    
T  32428111 tcatgtcaactgacatatttctattgacagggca 32428078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 20818904 - 20818969
Alignment:
Q  211 ggtgttccaagaggtgtttttgaacttgatccagctgacctgtcagttgacatatttctatcggca 276  Q
    ||||||| |||||||| ||||||||| |||||| ||||| || ||  |||||||||||||||||||    
T  20818904 ggtgttcgaagaggtgcttttgaactcgatccaactgacttgccaactgacatatttctatcggca 20818969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 147 - 267
Target Start/End: Complemental strand, 13909791 - 13909673
Alignment:
Q  147 gtaaacgacacaattcaacaacgtaaa-acaacataataataagagaagtgatgatgaaagactaggtgttccaagaggtgtttttgaacttgatccagc 245  Q
    ||||||||||  |||||||| |||||| ||||||||||||   |||||||| |||||||||   | ||||||||  |||||||||||||||||||| |||    
T  13909791 gtaaacgacatgattcaacagcgtaaagacaacataataa---gagaagtggtgatgaaaggaaaagtgttccataaggtgtttttgaacttgatctagc 13909695  T
Q  246 tgacctgtcagttgacatattt 267  Q
    |||| |||||  ||||||||||    
T  13909694 tgacttgtcaactgacatattt 13909673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 17133570 - 17133640
Alignment:
Q  218 caagaggtgtttttgaacttgatccagctgacctgtcagttgacatatttctatcggcagggcaattggat 288  Q
    ||||||||||||||||||||||||||||| || | ||| || |||||||||||| |||| | |||||||||    
T  17133570 caagaggtgtttttgaacttgatccagctaacttatcaattaacatatttctattggcatgacaattggat 17133640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 288
Target Start/End: Complemental strand, 10134628 - 10134550
Alignment:
Q  210 aggtgttccaagaggtgtttttgaacttgatccagctgacctgtcagttgacatatttctatcggcagggcaattggat 288  Q
    |||||||| |||||||| ||||| ||||||||| |||  |||||||  ||||||||||| | ||||||| |||||||||    
T  10134628 aggtgttcgaagaggtgattttgcacttgatcctgctagcctgtcaactgacatatttcgaccggcaggtcaattggat 10134550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 27495526 - 27495567
Alignment:
Q  211 ggtgttccaagaggtgtttttgaacttgatccagctgacctg 252  Q
    ||||||| |||||||| ||||||||| |||||||||||||||    
T  27495526 ggtgttcgaagaggtgcttttgaactcgatccagctgacctg 27495567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 32474843 - 32474909
Alignment:
Q  222 aggtgtttttgaacttgatccagctgacctgtcagttgacatatttctatcggcagggcaattggat 288  Q
    |||||||||||||||||||||||||||| ||||| |  ||||||||||| || | ||||||||||||    
T  32474843 aggtgtttttgaacttgatccagctgacatgtcaatcaacatatttctaacgacggggcaattggat 32474909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 32474780 - 32474839
Alignment:
Q  147 gtaaacgacacaattcaacaacgtaaaacaacataataataagagaagtgatgatgaaag 206  Q
    |||||||||  |||||| |||||||||||||||||||||| | |||||| ||| ||||||    
T  32474780 gtaaacgacgtaattcagcaacgtaaaacaacataataattaaagaagttatgttgaaag 32474839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 815965 - 816043
Alignment:
Q  210 aggtgttccaagaggtgtttttgaacttgatccagctgacctgtcagttgacatatttctatcggcagggcaattggat 288  Q
    |||||||  ||| |||| ||||| | ||||||||||| ||||||||  ||||||||||| ||||||||| ||| |||||    
T  815965 aggtgtttgaagcggtgcttttgtatttgatccagctaacctgtcaactgacatatttcgatcggcaggtcaactggat 816043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 281
Target Start/End: Original strand, 77693 - 77823
Alignment:
Q  148 taaacgacacaattcaacaacgtaaaacaacataataataagagaagtgatgatgaaagactaggtgttccaagaggtgtttttgaacttgatccagctg 247  Q
    ||||||||| |||| |||||| ||||||| ||||||||   || |||| ||||| || |   | |||||| ||||||| ||||||||||||||||  |||    
T  77693 taaacgacataattaaacaacctaaaacagcataataa---gataagtaatgataaaggggaaagtgttctaagaggtctttttgaacttgatcctactg 77789  T
Q  248 acctgtcagttgacatatttctatcggcagggca 281  Q
     | |||||  |||||||||||||| |||||||||    
T  77790 ccttgtcaactgacatatttctattggcagggca 77823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 273
Target Start/End: Complemental strand, 7631587 - 7631475
Alignment:
Q  158 aattcaacaacgtaaaacaacataataataagagaagtgatgatgaaagactaggtgttccaagaggtgtttttgaacttgatccagctgacctgtcagt 257  Q
    ||||||||  |||||||||||||||||| |   ||||||||||| ||||   |||||||  ||||||||||||||||||||||  || || | || |  |    
T  7631587 aattcaacggcgtaaaacaacataataaca---gaagtgatgattaaaggaaaggtgtttaaagaggtgtttttgaacttgatttagttggcttggccat 7631491  T
Q  258 tgacatatttctatcg 273  Q
    ||||||||||||||||    
T  7631490 tgacatatttctatcg 7631475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 252
Target Start/End: Original strand, 20183146 - 20183216
Alignment:
Q  182 ataataagagaagtgatgatgaaagactaggtgttccaagaggtgtttttgaacttgatccagctgacctg 252  Q
    ||||||||| |||||||||||||||   ||||||||| ||||| ||||  |||||||||| || |||||||    
T  20183146 ataataagataagtgatgatgaaagggaaggtgttcctagaggagtttcggaacttgatctaggtgacctg 20183216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 109968 - 109907
Alignment:
Q  210 aggtgttccaagaggtgtttttgaacttgatccagctgacctgtcagttgacatatttctat 271  Q
    ||||||| ||||| || ||||||||||||||||  ||||| || ||| ||||||||||||||    
T  109968 aggtgtttcaagatgtttttttgaacttgatccttctgacatgccagctgacatatttctat 109907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University