View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20147_low_25 (Length: 309)
Name: NF20147_low_25
Description: NF20147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20147_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 23971933 - 23971641
Alignment:
| Q |
1 |
tgatgaagaagtcgctcgtggttttgataagataatagacattgatcagagtaaagatgtgtgggaccttgttgtgaggattgttgatcattggccagtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
23971933 |
tgatgaagaagtcgctcgtggttttgataagataatagacattgatcagagtaaagatgtgtgggtccttgttgtgaggattgttgatctttggccagtt |
23971834 |
T |
|
| Q |
101 |
attggcaaatacaaaagtgaacatcatgaaatgatcgttaaggatgctgaggtatggttttcttttctatctatttgattctttcaataagttcatttca |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23971833 |
attggcaaatacaaaagtgaacatcttgaaatgatcgttaaggatgttgaggtatggttttcttttctatctatttgattcattcaataagttcatttca |
23971734 |
T |
|
| Q |
201 |
ataacactttactgactacttacaaatttacaaccatacagggtgatataattcatattacgctccctaaagaattactcaatacatttaaac |
293 |
Q |
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| T |
23971733 |
ataacactttactgactacttacaaatttacaaccatacagggtgatgtaattcatattacgctccctaaagaataactcaataaatttaaac |
23971641 |
T |
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Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 33538367 - 33538659
Alignment:
| Q |
1 |
tgatgaagaagtcgctcgtggttttgataagataatagacattgatcagagtaaagatgtgtgggaccttgttgtgaggattgttgatcattggccagtt |
100 |
Q |
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||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||| ||| |
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| T |
33538367 |
tgatgaagaggtcgctcgtggttttgataagataacagacattgatcagagtaaagatgtgtgggtccttgctgtgaggattgttgatctttggccggtt |
33538466 |
T |
|
| Q |
101 |
attggcaaatacaaaagtgaacatcatgaaatgatcgttaaggatgctgaggtatggttttcttttctatctatttgattctttcaataagttcatttca |
200 |
Q |
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||||||||||||||||||||| || |||||||||| ||||||||||||| ||| | |||||||||| ||||||| ||||||||||||| ||||||||| |
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| T |
33538467 |
attggcaaatacaaaagtgaaagtcttgaaatgatcattaaggatgctgaagtaggcttttcttttcagtctatttcattctttcaataacttcatttca |
33538566 |
T |
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| Q |
201 |
ataacactttactgactacttacaaatttacaaccatacagggtgatataattcatattacgctccctaaagaattactcaatacatttaaac |
293 |
Q |
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||| | ||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||| |||||||| |||||| ||||||||| |
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| T |
33538567 |
atatcgctttactgactacttcaaaatttacaaccatacaggctgatgtaattcatattacgctcccgaaagaatttctcaatgcatttaaac |
33538659 |
T |
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