View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20147_low_27 (Length: 297)
Name: NF20147_low_27
Description: NF20147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20147_low_27 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 32962252 - 32962531
Alignment:
| Q |
1 |
ctacacattaattaactactataaacttgggtatttttccatgtttaggaggtagatgtataatttggatgaatgcgtcaatttagtaaaagtatattga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32962252 |
ctacacattaattaactactataaacttgggtatttttccatgtttaggaggtagatgtataatttggatgaatgcgtcaatttagtaaaagtatattga |
32962351 |
T |
|
| Q |
101 |
atgatcatttttcataaatgcaagacacatttaaaaatcttcatgcaagttgttaattaattgtttgtttgattaatcnnnnnnnattccaagtacatcg |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32962352 |
atgataatttttcataaatgcaagacacatttaaaaatcttcatgcaagttgttaattaattgtttgtttgattaatctttttttattccaagtacatcg |
32962451 |
T |
|
| Q |
201 |
aatcaaacaatgatcttaatcaacttgc-nnnnnnnattattgtaaaggacagagtcccaaatatacccaccatgagtat |
279 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32962452 |
aatcaaacaatgatcttaatcaacttgcttttttttattatagtaaaggacagagtcccaaatatacccaccatgggtat |
32962531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University