View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20147_low_29 (Length: 279)
Name: NF20147_low_29
Description: NF20147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20147_low_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 53174862 - 53174714
Alignment:
| Q |
13 |
actatccaccactggttctgtttcatctattcttcatggtaactacataaacctctttatttgtcatagaaatgatgttttggtatcaaaacatgaaatg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53174862 |
actatccaccactggttctgtttcatctattcttcatggtaactacataaacctctttatttgtcatagaaatgatgttttggtatcaaaacatgaaatg |
53174763 |
T |
|
| Q |
113 |
nnnnnnngggttgttaatagtatatgaaaatcttgttatattgcagatg |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
53174762 |
aaaaaaagggttgttaatagtatatgaaaatcttgttatattgtagatg |
53174714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 148 - 264
Target Start/End: Complemental strand, 27774864 - 27774748
Alignment:
| Q |
148 |
ttatattgcagatgctgagggatgactcccttcccgtttgcttacctgagaaagtacatgatgtgaaattgggcgactcagctgaggagagtactgctac |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27774864 |
ttatattgcagatgctgagggatgactcccttcctgtttgcttacctgagaaagtacatgatgtgaaattgggcgactcagctgaggagagtactgctac |
27774765 |
T |
|
| Q |
248 |
tcctgcaaccgatgatg |
264 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
27774764 |
tcctgcaaccaatgatg |
27774748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University