View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20147_low_3 (Length: 535)
Name: NF20147_low_3
Description: NF20147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20147_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 17 - 520
Target Start/End: Complemental strand, 4175772 - 4175269
Alignment:
| Q |
17 |
actatgaagcataagttttgtgctatagagagccctgtactgccatgctccacgactacgacaaatctgcagaaacatcagcgcaactcgagagagtcgg |
116 |
Q |
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| T |
4175772 |
actatgaagcataagttttgtgctatagagagccctgtactgccatgctccacgactacgacaaatctgcagaaacatcagcgcaactcgagagagtcgg |
4175673 |
T |
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| Q |
117 |
gacagaagaaacaacggtcatcagcttacatcccttgcacgaatgtgaagaaagatgtttgatgaatcaagatagtttctttttctttttgatctagacc |
216 |
Q |
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| T |
4175672 |
gacagaagaaacaacggtcatcaccttacatcccttgcacgaatgtgaagaaagatgtttgatgaatcaagatagtttctttttctttttgatctagacc |
4175573 |
T |
|
| Q |
217 |
ctccgtgcagtttgagttgagtcgggtggactcggaagatgataaagttctaccaacgctattttttcattcataagacttgaattcaaaaccttattta |
316 |
Q |
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| T |
4175572 |
ctccgtgcagtttgagttgagtcgggtggactcggaagatgataaagttctaccaacgctattttttcattcataagacttgaattcaaaaccttattta |
4175473 |
T |
|
| Q |
317 |
aggggaaccaaagtcaatcttgtttgaaccaacaagcgttggttagtcgaaccagttctttgattcattcattttacctaatatatactaaatctttttt |
416 |
Q |
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| T |
4175472 |
aggggaaccaaagtcaatcttgtttgaaccaacaagcgttggttagtcgaactagttctttgattcattcattttacctagtatatactaaatctttttt |
4175373 |
T |
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| Q |
417 |
gtatgtgtaagtattttatgctaccttcttaagcatgcatttgttgtaatatgtcaattcgtagtaattgtttggta-tgtgttcggtcattgattatcg |
515 |
Q |
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| T |
4175372 |
gtatat-aaagtattttatgctaccttcataagcatgcatttgttgtaatatgacaattcgtagcacttgtttggtattgtgttcagtcattgattatcg |
4175274 |
T |
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| Q |
516 |
cgtcc |
520 |
Q |
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||||| |
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| T |
4175273 |
cgtcc |
4175269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 252 - 525
Target Start/End: Complemental strand, 4174199 - 4173926
Alignment:
| Q |
252 |
aagatgataaagttctaccaacgctattttttcattcataagacttgaattcaaaaccttatttaaggggaaccaaagtcaatcttgtttgaaccaacaa |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
4174199 |
aagatgataaagttctaccaacgctattttttcattcacaagactcgaattcaaaaccttatttaaggagaaccaaagtcaatcttatttgaaccaacaa |
4174100 |
T |
|
| Q |
352 |
gcgttggttagtcgaaccagttctttgattcattcattttacctaatatatactaaatcttttttgtatgtgtaagtattttatgctaccttcttaagca |
451 |
Q |
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| T |
4174099 |
gcgttggttagtcgaaccagttctttgattcattcattttacctaatatatactaaatcttttttgtatgtgtaagtattttatgctaccttcttaagca |
4174000 |
T |
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| Q |
452 |
tgcatttgttgtaatatgtcaattcgtagtaattgtttggtatgtgttcggtcattgattatcgcgtccctatg |
525 |
Q |
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| T |
4173999 |
tgcatttgttgtaatatgtcaattcgtagtaattgtttggtatgtgttcggtcattgattatcgcgtccctatg |
4173926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 457 - 520
Target Start/End: Original strand, 4042843 - 4042907
Alignment:
| Q |
457 |
ttgttgtaatatgtcaattcgtagtaattgtttggt-atgtgttcggtcattgattatcgcgtcc |
520 |
Q |
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| T |
4042843 |
ttgttgtaatatgtcattttgtagcacttgtttggtgttgtgttcagtcattgatcatcgcgtcc |
4042907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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