View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20147_low_30 (Length: 263)
Name: NF20147_low_30
Description: NF20147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20147_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 45640743 - 45640977
Alignment:
| Q |
13 |
aaaattcaaaggtttgtttcaagtctgtataataaagaaaatatatgattaagaaaatatttctttccttacacacaatctggctagtcat-tgataata |
111 |
Q |
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| T |
45640743 |
aaaattcaaaggtttgtttcaagtctgtataataaagaaaatatatgattaagaaaatatttctttccttacacacaatctggctagtcatctgataata |
45640842 |
T |
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| Q |
112 |
gactcttcgggctagtgacaataaagttgattgaatcttcatgaagcaggtgcaacatacctcttccaactcactttaagaaatctggagagtgtgataa |
211 |
Q |
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| T |
45640843 |
gactcttcgagctagtgacaataaagttgattgaatcttcatgaagcaggtgcaacatacctcttccaactcactttaagaaatctggagagtgcgataa |
45640942 |
T |
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| Q |
212 |
gaatcactctctttcttcacctggaaagcttgtat |
246 |
Q |
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| T |
45640943 |
gaatcactctctttcttcacctggaaagcttgtat |
45640977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 48 - 234
Target Start/End: Original strand, 45647206 - 45647392
Alignment:
| Q |
48 |
agaaaatatatgattaagaaaatatttctttccttacacacaatctggctagtcattgataatagactcttcgggctagtgacaataaagttgattgaat |
147 |
Q |
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|||||||| ||||||||||||||||||||||| || || |||| | |||||||||||||||||||||||| | |||||||| ||||||||||||||| |
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| T |
45647206 |
agaaaataaatgattaagaaaatatttctttctctatacgcaattggactagtcattgataatagactcttcaagatagtgacagtaaagttgattgaat |
45647305 |
T |
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| Q |
148 |
cttcatgaagcaggtgcaacatacctcttccaactcactttaagaaatctggagagtgtgataagaatcactctctttcttcacctg |
234 |
Q |
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| T |
45647306 |
tttcatgaagcaagtacaacatacctcatccaaatcactttaagtaattcgaagagtgcaagaagaatcaaactctttcttcacctg |
45647392 |
T |
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