View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20147_low_34 (Length: 236)

Name: NF20147_low_34
Description: NF20147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20147_low_34
NF20147_low_34
[»] chr8 (11 HSPs)
chr8 (174-236)||(9467363-9467425)
chr8 (174-236)||(453885-453947)
chr8 (174-236)||(39659716-39659777)
chr8 (174-229)||(5828332-5828387)
chr8 (174-217)||(24903254-24903297)
chr8 (179-235)||(5980067-5980124)
chr8 (174-213)||(17012801-17012840)
chr8 (174-213)||(17544361-17544400)
chr8 (174-216)||(22654570-22654612)
chr8 (195-236)||(13332387-13332428)
chr8 (180-213)||(17931296-17931329)
[»] chr7 (14 HSPs)
chr7 (174-236)||(6967327-6967389)
chr7 (174-236)||(17857884-17857946)
chr7 (174-236)||(17866357-17866419)
chr7 (174-236)||(38431691-38431753)
chr7 (176-236)||(3540930-3540989)
chr7 (177-233)||(6964588-6964644)
chr7 (178-234)||(16547303-16547359)
chr7 (178-234)||(16618303-16618359)
chr7 (174-235)||(709787-709847)
chr7 (174-217)||(2252177-2252220)
chr7 (174-217)||(23598532-23598575)
chr7 (178-229)||(17152260-17152310)
chr7 (178-217)||(20100950-20100989)
chr7 (180-217)||(26460771-26460808)
[»] chr6 (13 HSPs)
chr6 (174-236)||(14790798-14790860)
chr6 (174-236)||(14795826-14795888)
chr6 (174-235)||(12747108-12747169)
chr6 (174-232)||(11411065-11411123)
chr6 (174-217)||(2331588-2331631)
chr6 (174-229)||(28894239-28894294)
chr6 (176-236)||(33678947-33679009)
chr6 (178-235)||(22221903-22221959)
chr6 (178-235)||(22247738-22247794)
chr6 (180-235)||(23842565-23842621)
chr6 (174-217)||(22920835-22920878)
chr6 (180-235)||(23848073-23848129)
chr6 (174-217)||(17232161-17232204)
[»] chr1 (16 HSPs)
chr1 (174-236)||(10765099-10765161)
chr1 (174-236)||(13493442-13493504)
chr1 (180-236)||(18392691-18392747)
chr1 (174-236)||(34552442-34552503)
chr1 (174-236)||(49716669-49716731)
chr1 (174-236)||(49720151-49720213)
chr1 (176-236)||(50196721-50196781)
chr1 (174-217)||(17902557-17902600)
chr1 (174-217)||(20981665-20981708)
chr1 (176-232)||(6206184-6206239)
chr1 (178-217)||(24200017-24200056)
chr1 (174-217)||(37642167-37642210)
chr1 (174-236)||(32505861-32505922)
chr1 (180-217)||(16838709-16838746)
chr1 (180-217)||(16848639-16848676)
chr1 (176-216)||(14546487-14546527)
[»] chr5 (9 HSPs)
chr5 (174-236)||(2499766-2499828)
chr5 (174-236)||(34406028-34406090)
chr5 (174-236)||(21680656-21680717)
chr5 (174-236)||(33921394-33921455)
chr5 (177-236)||(1810197-1810256)
chr5 (176-229)||(33320685-33320738)
chr5 (178-229)||(9691067-9691117)
chr5 (174-217)||(26727252-26727295)
chr5 (180-213)||(20056160-20056193)
[»] chr4 (12 HSPs)
chr4 (176-236)||(647209-647269)
chr4 (176-236)||(650481-650541)
chr4 (174-232)||(33400079-33400137)
chr4 (176-235)||(37176936-37176993)
chr4 (178-236)||(15851472-15851529)
chr4 (174-236)||(19929177-19929238)
chr4 (174-217)||(3719265-3719308)
chr4 (174-235)||(8871474-8871537)
chr4 (174-217)||(3734619-3734662)
chr4 (174-217)||(14702212-14702255)
chr4 (174-217)||(49639586-49639629)
chr4 (181-217)||(11561123-11561159)
[»] scaffold0068 (1 HSPs)
scaffold0068 (174-236)||(33734-33795)
[»] chr3 (16 HSPs)
chr3 (174-236)||(19869277-19869339)
chr3 (174-234)||(25492199-25492259)
chr3 (174-235)||(3306147-3306209)
chr3 (176-236)||(27055171-27055230)
chr3 (178-235)||(30157805-30157863)
chr3 (174-235)||(4225621-4225681)
chr3 (174-235)||(20536337-20536400)
chr3 (180-231)||(31549573-31549625)
chr3 (174-217)||(5886751-5886794)
chr3 (174-217)||(5896735-5896778)
chr3 (174-217)||(6173117-6173160)
chr3 (174-217)||(16314357-16314400)
chr3 (174-217)||(16414523-16414566)
chr3 (174-217)||(18495351-18495394)
chr3 (174-217)||(23374497-23374540)
chr3 (179-236)||(26822048-26822104)
[»] scaffold0043 (2 HSPs)
scaffold0043 (176-229)||(13897-13950)
scaffold0043 (176-229)||(11554-11607)
[»] scaffold0401 (1 HSPs)
scaffold0401 (174-229)||(4564-4619)
[»] chr2 (6 HSPs)
chr2 (174-236)||(29436047-29436109)
chr2 (176-236)||(38315807-38315866)
chr2 (188-236)||(13572059-13572107)
chr2 (174-217)||(18939200-18939243)
chr2 (174-217)||(22592819-22592862)
chr2 (174-236)||(36327106-36327167)
[»] scaffold0273 (1 HSPs)
scaffold0273 (176-236)||(19515-19574)
[»] scaffold0045 (1 HSPs)
scaffold0045 (178-229)||(90306-90357)
[»] scaffold0175 (1 HSPs)
scaffold0175 (174-217)||(28428-28471)
[»] scaffold0083 (1 HSPs)
scaffold0083 (174-225)||(42910-42961)
[»] scaffold0012 (1 HSPs)
scaffold0012 (174-217)||(26647-26690)
[»] scaffold0264 (1 HSPs)
scaffold0264 (178-235)||(24193-24249)
[»] scaffold0067 (1 HSPs)
scaffold0067 (180-217)||(27668-27705)


Alignment Details
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 9467425 - 9467363
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  9467425 agatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggacc 9467363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 453947 - 453885
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    ||||||||| ||||||||||||||||||| ||| || ||||||||||||||||||||||||||    
T  453947 agatatttgacaagtgtaccaaaaactatggaagtactaataaagttcgtatccacgaggacc 453885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 39659716 - 39659777
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    |||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||    
T  39659716 agatatttggcaagtgtaccgaaa-ctatcgaagtagtaataaagttcgtatccacgaggacc 39659777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 5828387 - 5828332
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccac 229  Q
    |||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||    
T  5828387 agatatttggcaagtgtaccaaaagctatcgaagtagtagtaaagttcgtatccac 5828332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 24903254 - 24903297
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  24903254 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 24903297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 5980067 - 5980124
Alignment:
Q  179 tttggcaagtgtaccaaaaactatcgaattagtaata-aagttcgtatccacgaggac 235  Q
    |||| ||||||||||||||||||||||| || ||| | ||||||||||||||||||||    
T  5980067 tttgacaagtgtaccaaaaactatcgaagtaataacataagttcgtatccacgaggac 5980124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 213
Target Start/End: Original strand, 17012801 - 17012840
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaa 213  Q
    |||||||||||||||||||||| |||||||||| ||||||    
T  17012801 agatatttggcaagtgtaccaataactatcgaagtagtaa 17012840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 17544400 - 17544361
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaa 213  Q
    |||||||||||||||||||||| |||||||||| ||||||    
T  17544400 agatatttggcaagtgtaccaataactatcgaagtagtaa 17544361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 22654612 - 22654570
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataa 216  Q
    |||||||||||||||||| ||| |||||||||| |||||||||    
T  22654612 agatatttggcaagtgtatcaataactatcgaagtagtaataa 22654570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 13332428 - 13332387
Alignment:
Q  195 aaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    |||||||||||| ||||||||||||| ||||||| |||||||    
T  13332428 aaaactatcgaagtagtaataaagtttgtatccatgaggacc 13332387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 17931329 - 17931296
Alignment:
Q  180 ttggcaagtgtaccaaaaactatcgaattagtaa 213  Q
    ||||||||||||||||||||||||||| ||||||    
T  17931329 ttggcaagtgtaccaaaaactatcgaagtagtaa 17931296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 6967389 - 6967327
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  6967389 agatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggacc 6967327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 17857884 - 17857946
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  17857884 agatatttggcaagtgtaccaaaagctatcgaaatagtaataaagttcgtatccacgaggacc 17857946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 17866357 - 17866419
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  17866357 agatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggacc 17866419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 38431753 - 38431691
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    |||||||||| ||||||||||||| |||||||| ||||||||||||||||||||| |||||||    
T  38431753 agatatttggaaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccatgaggacc 38431691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 3540930 - 3540989
Alignment:
Q  176 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    |||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||    
T  3540930 atatttggcaagtgtaccaaaa-ctatcaaagtagtaataaagttcgtatccacgaggacc 3540989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 6964644 - 6964588
Alignment:
Q  177 tatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgagg 233  Q
    ||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  6964644 tatttggtaagtgtaccaaaaactatcgaagtagtaatgaagttcgtatccacgagg 6964588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 16547359 - 16547303
Alignment:
Q  178 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgagga 234  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||    
T  16547359 atttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacaagga 16547303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 16618303 - 16618359
Alignment:
Q  178 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgagga 234  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||    
T  16618303 atttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacaagga 16618359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 709787 - 709847
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggac 235  Q
    |||||||||||||||||||||| |||||||||| ||||||||||  |||| |||||||||||    
T  709787 agatatttggcaagtgtaccaataactatcgaagtagtaataaatatcgt-tccacgaggac 709847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 2252220 - 2252177
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  2252220 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 2252177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 23598532 - 23598575
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  23598532 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 23598575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 17152310 - 17152260
Alignment:
Q  178 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccac 229  Q
    ||||| |||||||||||||| |||||||| ||||||||||||| ||||||||    
T  17152310 atttgacaagtgtaccaaaa-ctatcgaagtagtaataaagtttgtatccac 17152260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 20100989 - 20100950
Alignment:
Q  178 atttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    |||||||||||||||||| |||||||||| ||||||||||    
T  20100989 atttggcaagtgtaccaataactatcgaagtagtaataaa 20100950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 26460808 - 26460771
Alignment:
Q  180 ttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  26460808 ttggcaagtgtaccaataactatcgaagtagtaataaa 26460771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 14790860 - 14790798
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  14790860 agatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggacc 14790798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 14795888 - 14795826
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||| | |||||||||    
T  14795888 agatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtacctacgaggacc 14795826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 12747169 - 12747108
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggac 235  Q
    ||||||||| |||||||||||||| |||||||| |||||||||||||||||||||| |||||    
T  12747169 agatatttgacaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacaaggac 12747108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 11411123 - 11411065
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgag 232  Q
    ||||| ||| ||||||||||||||||||||||| || ||||||||||||||||||||||    
T  11411123 agataattgacaagtgtaccaaaaactatcgaagtaataataaagttcgtatccacgag 11411065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 2331631 - 2331588
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  2331631 agatatttggcaagtgtaccaaaaactatcgaagtagtaataaa 2331588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 28894239 - 28894294
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccac 229  Q
    ||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||    
T  28894239 agatatttgacaagtgtaacaaaagctatcgaagtagtaataaagttcgtatccac 28894294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 33678947 - 33679009
Alignment:
Q  176 atatttggcaagtgtaccaaaa--actatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    ||||||||||||||||||||||  ||||||||| ||||| |||||||| ||||||||||||||    
T  33678947 atatttggcaagtgtaccaaaaaaactatcgaagtagtactaaagttcatatccacgaggacc 33679009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 22221959 - 22221903
Alignment:
Q  178 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggac 235  Q
    |||||||||||||||||||| |||||||| |||||||||| ||||| |||||||||||    
T  22221959 atttggcaagtgtaccaaaagctatcgaagtagtaataaa-ttcgtttccacgaggac 22221903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 22247794 - 22247738
Alignment:
Q  178 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggac 235  Q
    |||||||||||||||||||| |||||||| |||||||||| ||||| |||||||||||    
T  22247794 atttggcaagtgtaccaaaagctatcgaagtagtaataaa-ttcgtttccacgaggac 22247738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 23842565 - 23842621
Alignment:
Q  180 ttggcaagtgtaccaaaaactatcgaattagtaata-aagttcgtatccacgaggac 235  Q
    ||||||||||||||||||||||||||| || ||| | ||||||||||||||||||||    
T  23842565 ttggcaagtgtaccaaaaactatcgaaataataaaataagttcgtatccacgaggac 23842621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 22920878 - 22920835
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  22920878 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 22920835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 23848129 - 23848073
Alignment:
Q  180 ttggcaagtgtaccaaaaactatcgaattagtaata-aagttcgtatccacgaggac 235  Q
    ||||||||||||||||||||||||||  || ||| | ||||||||||||||||||||    
T  23848129 ttggcaagtgtaccaaaaactatcgacataataaaataagttcgtatccacgaggac 23848073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 17232204 - 17232161
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||    
T  17232204 agatatttgacaagtgtaccaataactatcgaagtagtaataaa 17232161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 10765161 - 10765099
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  10765161 agatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggacc 10765099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 13493504 - 13493442
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  13493504 agatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggacc 13493442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 18392747 - 18392691
Alignment:
Q  180 ttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  18392747 ttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggacc 18392691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 34552442 - 34552503
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    ||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  34552442 agatatttgacaagtgtaccaaaa-ctatcgaagtagtaataaagttcgtatccacgaggacc 34552503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 49716731 - 49716669
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    ||||| ||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  49716731 agataattgacaagtgtaccaaaaactatcgaagtaataataaagttcgtatccacgaggacc 49716669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 49720213 - 49720151
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    ||||| ||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  49720213 agataattgacaagtgtaccaaaaactatcgaagtaataataaagttcgtatccacgaggacc 49720151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 50196721 - 50196781
Alignment:
Q  176 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    ||||||||||||||||||||||||||| ||| || ||||||| || |||||||||||||||    
T  50196721 atatttggcaagtgtaccaaaaactattgaagtaataataaaatttgtatccacgaggacc 50196781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 17902557 - 17902600
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  17902557 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 17902600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 20981708 - 20981665
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  20981708 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 20981665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 6206239 - 6206184
Alignment:
Q  176 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgag 232  Q
    |||||| |||||||||| ||||  ||||||| |||||||||||||||||||||||||    
T  6206239 atatttagcaagtgtactaaaat-tatcgaagtagtaataaagttcgtatccacgag 6206184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 24200017 - 24200056
Alignment:
Q  178 atttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    |||||||||||||||||| |||||||||| ||||||||||    
T  24200017 atttggcaagtgtaccaataactatcgaagtagtaataaa 24200056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 37642210 - 37642167
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||    
T  37642210 agatatttgacaagtgtaccaataactatcgaagtagtaataaa 37642167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 32505861 - 32505922
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    |||||||||||||||| ||||||| |||||||| || |||  ||| |||||||||||||||||    
T  32505861 agatatttggcaagtgaaccaaaa-ctatcgaagtaataaataagatcgtatccacgaggacc 32505922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 16838709 - 16838746
Alignment:
Q  180 ttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  16838709 ttggcaagtgtaccaataactatcgaagtagtaataaa 16838746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 16848639 - 16848676
Alignment:
Q  180 ttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  16848639 ttggcaagtgtaccaataactatcgaagtagtaataaa 16848676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 14546487 - 14546527
Alignment:
Q  176 atatttggcaagtgtaccaaaaactatcgaattagtaataa 216  Q
    |||||||||||||||| ||||||||||||||  ||||||||    
T  14546487 atatttggcaagtgtatcaaaaactatcgaagaagtaataa 14546527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 2499766 - 2499828
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    ||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||    
T  2499766 agatatttggcaagtgtaccaaaagatatcgaagtagtaataaagttcgtatccacgaggacc 2499828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 34406090 - 34406028
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||    
T  34406090 agatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacaaggacc 34406028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 21680717 - 21680656
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||    
T  21680717 agatatttggcaagtgtaccaaaa-ctatcgaagtagtaataaagtttgtatccacgaggacc 21680656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 33921455 - 33921394
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    ||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  33921455 agatattcggcaagtgtaccaaaa-ctatcgaagtagtaataaagttcgtatccacgaggacc 33921394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 1810197 - 1810256
Alignment:
Q  177 tatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    |||||| |||||||||||||| |||||||| |||||||||||||||||| ||||||||||    
T  1810197 tatttgacaagtgtaccaaaagctatcgaagtagtaataaagttcgtattcacgaggacc 1810256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 33320685 - 33320738
Alignment:
Q  176 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccac 229  Q
    |||||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  33320685 atatttggcaagtgtaccaaaagctatcgaagtaataataaagttcgtatccac 33320738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 9691117 - 9691067
Alignment:
Q  178 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccac 229  Q
    |||||||||||||||||||| | |||||| ||||||||||||||||||||||    
T  9691117 atttggcaagtgtaccaaaacc-atcgaagtagtaataaagttcgtatccac 9691067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 26727295 - 26727252
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  26727295 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 26727252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 20056193 - 20056160
Alignment:
Q  180 ttggcaagtgtaccaaaaactatcgaattagtaa 213  Q
    ||||||||||||||||||||||||||| ||||||    
T  20056193 ttggcaagtgtaccaaaaactatcgaagtagtaa 20056160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 647209 - 647269
Alignment:
Q  176 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    |||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||    
T  647209 atatttggcaagtgtaccaaaagctatcgaagtagtaataaagtttgtatccacgaggacc 647269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 650481 - 650541
Alignment:
Q  176 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    |||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||    
T  650481 atatttggcaagtgtaccaaaagctatcgaagtagtaataaagtttgtatccacgaggacc 650541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 33400079 - 33400137
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgag 232  Q
    |||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||    
T  33400079 agatatttggcaagtgtaccaaaagctatcgaggtagtaataaagttcgtatccacgag 33400137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 37176993 - 37176936
Alignment:
Q  176 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggac 235  Q
    |||||||||||||||||||||| |||||||  |||||||||||||||||||||| |||||    
T  37176993 atatttggcaagtgtaccaaaagctatcga--tagtaataaagttcgtatccacaaggac 37176936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 15851529 - 15851472
Alignment:
Q  178 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    |||||||||||||||||||| |||||||| || || |||||||||||||||||||||||    
T  15851529 atttggcaagtgtaccaaaa-ctatcgaagtaatagtaaagttcgtatccacgaggacc 15851472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 19929238 - 19929177
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    |||||||||||||||||||||| |||||||||| ||||||||||  |||| ||||||||||||    
T  19929238 agatatttggcaagtgtaccaataactatcgaagtagtaataaatatcgt-tccacgaggacc 19929177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 3719265 - 3719308
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  3719265 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 3719308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 8871474 - 8871537
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaa--taaagttcgtatccacgaggac 235  Q
    |||||| |||||||||||||||||||||||||| ||||||   |||| |||| |||||||||||    
T  8871474 agatatctggcaagtgtaccaaaaactatcgaagtagtaaagaaaagatcgtctccacgaggac 8871537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 3734662 - 3734619
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    ||||| |||||||||||||||| |||||||||| ||||||||||    
T  3734662 agataattggcaagtgtaccaataactatcgaagtagtaataaa 3734619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 14702255 - 14702212
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    ||||||||||||| |||||||| |||||||||| ||||||||||    
T  14702255 agatatttggcaaatgtaccaataactatcgaagtagtaataaa 14702212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 49639586 - 49639629
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    ||||| |||||||||||||||| |||||||||| ||||||||||    
T  49639586 agataattggcaagtgtaccaataactatcgaagtagtaataaa 49639629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 11561159 - 11561123
Alignment:
Q  181 tggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  11561159 tggcaagtgtacaaaaaactatcgaagtagtaataaa 11561123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 33734 - 33795
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||    
T  33734 agatatttggcaagtgtaccaaaa-ctatcgaagtagtaataaagtttgtatccacgaggacc 33795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 19869339 - 19869277
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    ||||||||||||||||||| |||| ||||| || |||||||||||||||||||||||||||||    
T  19869339 agatatttggcaagtgtactaaaatctatcaaagtagtaataaagttcgtatccacgaggacc 19869277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 25492259 - 25492199
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgagga 234  Q
    ||||| ||| |||||||||||||| ||||| || |||||||||||||||||||||||||||    
T  25492259 agataattgacaagtgtaccaaaagctatcaaaatagtaataaagttcgtatccacgagga 25492199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 3306209 - 3306147
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagt-aataaagttcgtatccacgaggac 235  Q
    |||||||||||||||||||||| |||||||||| || | ||| ||||||||||||||||||||    
T  3306209 agatatttggcaagtgtaccaataactatcgaagtaataaattaagttcgtatccacgaggac 3306147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 27055230 - 27055171
Alignment:
Q  176 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    ||||||||||||  |||||||| |||||||| |||||||||| ||||||||||||||||||    
T  27055230 atatttggcaagcataccaaaa-ctatcgaagtagtaataaatttcgtatccacgaggacc 27055171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 30157805 - 30157863
Alignment:
Q  178 atttggcaagtgtaccaaaaactatcgaattagt-aataaagttcgtatccacgaggac 235  Q
    |||||||||||||||||| |||||||||| || | ||| ||||||||||||||||||||    
T  30157805 atttggcaagtgtaccaataactatcgaagtaataaattaagttcgtatccacgaggac 30157863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 4225621 - 4225681
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggac 235  Q
    |||||||||||||||||||| || ||||||||| ||||||||||| | ||||||| ||||||    
T  4225621 agatatttggcaagtgtacc-aatactatcgaagtagtaataaagattgtatccatgaggac 4225681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 20536337 - 20536400
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaa--taaagttcgtatccacgaggac 235  Q
    |||||||||| |||||||||||||||||| ||| ||||||   |||| ||||||||||||||||    
T  20536337 agatatttggaaagtgtaccaaaaactattgaagtagtaaataaaagatcgtatccacgaggac 20536400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 31549625 - 31549573
Alignment:
Q  180 ttggcaagtgtaccaaaaactatcgaattagtaata-aagttcgtatccacga 231  Q
    ||||||||||||||||||||||||||| || ||| | ||||||||||||||||    
T  31549625 ttggcaagtgtaccaaaaactatcgaagtaataaaataagttcgtatccacga 31549573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 5886751 - 5886794
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    ||||| |||||||||||||||| |||||||||| ||||||||||    
T  5886751 agataattggcaagtgtaccaataactatcgaagtagtaataaa 5886794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 5896735 - 5896778
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    ||||| |||||||||||||||| |||||||||| ||||||||||    
T  5896735 agataattggcaagtgtaccaataactatcgaagtagtaataaa 5896778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 6173117 - 6173160
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    ||||| |||||||||||||||| |||||||||| ||||||||||    
T  6173117 agatagttggcaagtgtaccaataactatcgaagtagtaataaa 6173160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 16314357 - 16314400
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||    
T  16314357 agatatttggcaagtgtaccaataactatggaagtagtaataaa 16314400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 16414523 - 16414566
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||    
T  16414523 agatatttggcaagtgtaccaataactatggaagtagtaataaa 16414566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 18495351 - 18495394
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||    
T  18495351 agatatttggcaagtgtaccaataactatggaagtagtaataaa 18495394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 23374497 - 23374540
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    ||||| |||||||||||||||| |||||||||| ||||||||||    
T  23374497 agataattggcaagtgtaccaataactatcgaaatagtaataaa 23374540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 26822048 - 26822104
Alignment:
Q  179 tttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    ||||| ||||||||||||| |||||||| || ||||||| ||||||||||| ||||||    
T  26822048 tttggaaagtgtaccaaaa-ctatcgaagtaataataaaattcgtatccacaaggacc 26822104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 13950 - 13897
Alignment:
Q  176 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccac 229  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  13950 atatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccac 13897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 11607 - 11554
Alignment:
Q  176 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccac 229  Q
    |||||||||||||||||||||| ||||||||  |||||||||||||||||||||    
T  11607 atatttggcaagtgtaccaaaagctatcgaagcagtaataaagttcgtatccac 11554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 4619 - 4564
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccac 229  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||    
T  4619 agatatttggcaagtgtacaaaaaactatcgaagtagtaataaagtttgtatccac 4564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 29436109 - 29436047
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    ||||| ||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  29436109 agataattgacaagtgtatcaaaaactatcgaagtaataataaagttcgtatccacgaggacc 29436047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 38315807 - 38315866
Alignment:
Q  176 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    |||||||| ||||||| ||||| |||||||| |||||||||||||||||||||||||||||    
T  38315807 atatttggtaagtgtatcaaaa-ctatcgaagtagtaataaagttcgtatccacgaggacc 38315866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 13572059 - 13572107
Alignment:
Q  188 tgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    |||||||||| |||||||| ||||||||||||||||||| |||||||||    
T  13572059 tgtaccaaaagctatcgaagtagtaataaagttcgtatctacgaggacc 13572107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 18939243 - 18939200
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    ||||| |||||||||||||||| |||||||||| ||||||||||    
T  18939243 agataattggcaagtgtaccaataactatcgaagtagtaataaa 18939200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 22592862 - 22592819
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||    
T  22592862 agatatttggtaagtgtaccaataactatcgaagtagtaataaa 22592819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 36327167 - 36327106
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    |||||||||||||||| ||||||| |||||||| || |||  || ||||||||||||||||||    
T  36327167 agatatttggcaagtgaaccaaaa-ctatcgaagtaataaataaattcgtatccacgaggacc 36327106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 19515 - 19574
Alignment:
Q  176 atatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggacc 236  Q
    |||||||||||||||||||||| || || || |||||||||||||||||||||||||||||    
T  19515 atatttggcaagtgtaccaaaa-ctgtcaaagtagtaataaagttcgtatccacgaggacc 19574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 90306 - 90357
Alignment:
Q  178 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccac 229  Q
    |||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  90306 atttggcaagtgtaccaaaagctatcgaagtactaataaagttcgtatccac 90357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 28428 - 28471
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  28428 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 28471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 42961 - 42910
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtat 225  Q
    ||||||||| |||||||||||||| |||||||| | ||||||||||||||||    
T  42961 agatatttgtcaagtgtaccaaaagctatcgaagtcgtaataaagttcgtat 42910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 26647 - 26690
Alignment:
Q  174 agatatttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  26647 agatatttggcaagtgtaccaataactatcgaagtagtaataaa 26690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 24193 - 24249
Alignment:
Q  178 atttggcaagtgtaccaaaaactatcgaattagtaataaagttcgtatccacgaggac 235  Q
    |||||||||||||||||||| |||||||| |||||||||| || || |||||||||||    
T  24193 atttggcaagtgtaccaaaagctatcgaagtagtaataaa-tttgtttccacgaggac 24249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 27705 - 27668
Alignment:
Q  180 ttggcaagtgtaccaaaaactatcgaattagtaataaa 217  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  27705 ttggcaagtgtaccaataactatcgaagtagtaataaa 27668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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