View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20147_low_35 (Length: 236)
Name: NF20147_low_35
Description: NF20147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20147_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 54848652 - 54848452
Alignment:
| Q |
20 |
ttgatttcatttttctatattgaaactgtacaatgtatataaaccgcatgaatgcggaagtgctagaaatattaaacaataattaacttatatatacaac |
119 |
Q |
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| T |
54848652 |
ttgatttcatttttctatattgaaactgtacaatgtatataaaccgcatgaatgcggaagtgctagaaatattaaacaataattaacttatatatacaac |
54848553 |
T |
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| Q |
120 |
atgaggaagaaagcagagtaatgaatgattctaaacacgtgtttggaatgacactgagattgtcagaattatggtgaacataataattttgacaaaaact |
219 |
Q |
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| T |
54848552 |
atgaggaagaaagcagagtaatgaatgattctaaacacgtgtttggaatgacactgagattgtcagaattatggtgaacataataattttgacaaaaact |
54848453 |
T |
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| Q |
220 |
a |
220 |
Q |
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| T |
54848452 |
a |
54848452 |
T |
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