View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20147_low_36 (Length: 235)

Name: NF20147_low_36
Description: NF20147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20147_low_36
NF20147_low_36
[»] chr1 (5 HSPs)
chr1 (17-218)||(15499341-15499542)
chr1 (19-128)||(15247313-15247422)
chr1 (25-92)||(35989990-35990056)
chr1 (25-75)||(41933433-41933483)
chr1 (25-76)||(41932511-41932562)
[»] chr7 (4 HSPs)
chr7 (37-138)||(18043051-18043152)
chr7 (19-138)||(25879545-25879664)
chr7 (80-126)||(34877615-34877661)
chr7 (80-128)||(8920494-8920542)
[»] chr5 (2 HSPs)
chr5 (33-130)||(16490102-16490198)
chr5 (68-138)||(17476629-17476699)
[»] chr4 (2 HSPs)
chr4 (24-128)||(27060044-27060147)
chr4 (51-119)||(9073815-9073880)
[»] chr3 (3 HSPs)
chr3 (22-94)||(45662309-45662381)
chr3 (38-128)||(36337585-36337674)
chr3 (31-128)||(29582309-29582405)
[»] chr2 (2 HSPs)
chr2 (51-138)||(32474536-32474622)
chr2 (160-218)||(32474380-32474438)
[»] scaffold0376 (1 HSPs)
scaffold0376 (22-128)||(7265-7370)
[»] chr8 (1 HSPs)
chr8 (80-128)||(21217423-21217471)


Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 15499542 - 15499341
Alignment:
Q  17 cacagactgtggattgtggcgttacaccaaatgcttggacggtttatggtgtgtttaatgtcgtttttggtcggtttagaaatggtaaatgtttcctttg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15499542 cacagactgtggattgtggcgttacaccaaatgcttggacggtttatggtgtgtttaatgtcgtttttggtcggtttggaaatggtaaatgtttcctttg 15499443  T
Q  117 actgtagttacagtttatgatagtaaatagcattccatgcttcatgatatcatgaccagtgttgaccgctcatacgatccctgaaattattttgcagttt 216  Q
    | |||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  15499442 attgtagttacagtctatgatagtaaatagcattccattcttcatgatatcatgactagtgttgaccgctcatacgatccctgaaattactttgcagttt 15499343  T
Q  217 tt 218  Q
    ||    
T  15499342 tt 15499341  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 15247422 - 15247313
Alignment:
Q  19 cagactgtggattgtggcgttacaccaaatgcttggacggtttatggtgtgtttaatgtcgtttttggtcggtttagaaatggtaaatgtttcctttgac 118  Q
    ||||||||||||  ||||||||||||||| | ||||||| ||| ||||||||||||||| |||||||||||||||||| |||| ||| || ||||||||     
T  15247422 cagactgtggatgttggcgttacaccaaaggtttggacgatttttggtgtgtttaatgttgtttttggtcggtttagacatggcaaacgtgtcctttgat 15247323  T
Q  119 tgtagttaca 128  Q
    ||||||||||    
T  15247322 tgtagttaca 15247313  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 35989990 - 35990056
Alignment:
Q  25 gtggattgtggcgttacaccaaatgcttggacggtttatggtgtgtttaatgtcgtttttggtcggtt 92  Q
    ||||||||||||||| |||| |||| ||||||||||| |||||||||||||| | |||||||||||||    
T  35989990 gtggattgtggcgtttcacccaatgtttggacggtttgtggtgtgtttaatg-catttttggtcggtt 35990056  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 41933433 - 41933483
Alignment:
Q  25 gtggattgtggcgttacaccaaatgcttggacggtttatggtgtgtttaat 75  Q
    ||||||||||||||| ||||||| | ||||||||||| |||||||||||||    
T  41933433 gtggattgtggcgtttcaccaaaggtttggacggtttgtggtgtgtttaat 41933483  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 41932511 - 41932562
Alignment:
Q  25 gtggattgtggcgttacaccaaatgcttggacggtttatggtgtgtttaatg 76  Q
    ||||||||||||||| ||||||| | | ||||||||| ||||||||||||||    
T  41932511 gtggattgtggcgtttcaccaaaggttgggacggtttgtggtgtgtttaatg 41932562  T

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Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 138
Target Start/End: Complemental strand, 18043152 - 18043051
Alignment:
Q  37 gttacaccaaatgcttggacggtttatggtgtgtttaatgtcgtttttggtcggtttagaaatggtaaatgtttcctttgactgtagttacagtttatga 136  Q
    ||||||||||  | |||||||||||  |||||||||||||| |||||||| ||||||||  |||||||| ||||||||| | |||||||||||| |||||    
T  18043152 gttacaccaacggtttggacggtttgcggtgtgtttaatgttgtttttggccggtttaggcatggtaaacgtttccttttattgtagttacagtctatga 18043053  T
Q  137 ta 138  Q
    ||    
T  18043052 ta 18043051  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 25879664 - 25879545
Alignment:
Q  19 cagactgtggattgtggcgttacaccaaatgcttggacggtttatggtgtgtttaatgtcgtttttggtcggtttagaaatggtaaatgtttcctttgac 118  Q
    ||||||||||||  || | |||||||||| | || ||| |||| |||||||||||||||  ||||||||||||||||| ||||||||  ||| ||||  |    
T  25879664 cagactgtggatgatgacattacaccaaaggtttagactgtttgtggtgtgtttaatgttatttttggtcggtttagacatggtaaacattttctttatc 25879565  T
Q  119 tgtagttacagtttatgata 138  Q
    ||||||||| || |||||||    
T  25879564 tgtagttacggtctatgata 25879545  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 34877615 - 34877661
Alignment:
Q  80 tttttggtcggtttagaaatggtaaatgtttcctttgactgtagtta 126  Q
    ||||||||||||||||| || ||||| |||||||||| |||||||||    
T  34877615 tttttggtcggtttagacattgtaaacgtttcctttgtctgtagtta 34877661  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 8920542 - 8920494
Alignment:
Q  80 tttttggtcggtttagaaatggtaaatgtttcctttgactgtagttaca 128  Q
    |||||||||||||||   || ||||||||||||||||||| ||||||||    
T  8920542 tttttggtcggtttatgcattgtaaatgtttcctttgactatagttaca 8920494  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 130
Target Start/End: Original strand, 16490102 - 16490198
Alignment:
Q  33 tggcgttacaccaaatgcttggacggtttatggtgtgtttaatgtcgtttttggtcggtttagaaatggtaaatgtttcctttgactgtagttacagt 130  Q
    |||| |||||||||| | || |||||||| |||||||||||||||  ||||||||||||||||  || ||||| || |||||||| ||||||||||||    
T  16490102 tggcattacaccaaaggttttgacggtttgtggtgtgtttaatgta-tttttggtcggtttaggcatcgtaaacgtatcctttgaatgtagttacagt 16490198  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 17476699 - 17476629
Alignment:
Q  68 tgtttaatgtcgtttttggtcggtttagaaatggtaaatgtttcctttgactgtagttacagtttatgata 138  Q
    |||||||||| ||||||||||| ||||   |||||||||||||||||||| ||||||||| || |||||||    
T  17476699 tgtttaatgttgtttttggtcgatttatgcatggtaaatgtttcctttgattgtagttacggtctatgata 17476629  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 27060044 - 27060147
Alignment:
Q  24 tgtggattgtggcgttacaccaaatgcttggacggtttatggtgtgtttaatgtcgtttttggtcggtttagaaatggtaaatgtttcctttgactgtag 123  Q
    ||||||||||||| |||||   ||||  |||||||| | |||||||||||||| | |||||  |||||||||| || ||||||||||| |||||||| ||    
T  27060044 tgtggattgtggcattacaagcaatgtgtggacggtctgtggtgtgtttaatg-catttttaatcggtttagacattgtaaatgtttcttttgactgcag 27060142  T
Q  124 ttaca 128  Q
    |||||    
T  27060143 ttaca 27060147  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 9073880 - 9073815
Alignment:
Q  51 ttggacggtttatggtgtgtttaatgtcgtttttggtcggtttagaaatggtaaatgtttcctttgact 119  Q
    ||||||||||| ||||||||  |||| | |||||||||| |||||| || |||||||||||||||||||    
T  9073880 ttggacggtttgtggtgtgt--aatg-catttttggtcgatttagacattgtaaatgtttcctttgact 9073815  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 45662309 - 45662381
Alignment:
Q  22 actgtggattgtggcgttacaccaaatgcttggacggtttatggtgtgtttaatgtcgtttttggtcggttta 94  Q
    ||||||||  ||| ||||||||||||   ||| ||||||| || |||||||||||| ||||||||||||||||    
T  45662309 actgtggacggtgacgttacaccaaagatttgaacggtttgtgatgtgtttaatgttgtttttggtcggttta 45662381  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 36337674 - 36337585
Alignment:
Q  38 ttacaccaaatgcttggacggtttatggtgtgtttaatgtcgtttttggtcggtttagaaatggtaaatgtttcctttgactgtagttaca 128  Q
    ||||||| || | ||||||||||| |||||||||||||| | ||||| |||||||||   ||  |||| |||||||| |||||||||||||    
T  36337674 ttacacccaaagtttggacggtttgtggtgtgtttaatg-catttttagtcggtttatgcattctaaacgtttccttcgactgtagttaca 36337585  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 128
Target Start/End: Complemental strand, 29582405 - 29582309
Alignment:
Q  31 tgtggcgttacaccaaatgcttggacggtttatggtgtgtttaatgtcgtttttggtcggtttagaaatggtaaatgtttcctttgactgtagttaca 128  Q
    ||||||||| |||| || | ||||| | ||| |||||||||||||| | |||| ||||||||   | || ||||||||||||||| ||||||||||||    
T  29582405 tgtggcgtttcacccaaggtttggatgatttgtggtgtgtttaatg-cattttcggtcggttggaacattgtaaatgtttccttttactgtagttaca 29582309  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 32474622 - 32474536
Alignment:
Q  51 ttggacggtttatggtgtgtttaatgtcgtttttggtcggtttagaaatggtaaatgtttcctttgactgtagttacagtttatgata 138  Q
    ||||| ||||||| ||||||||||| |  |||||||| ||||||   || |||||||| ||||||||| |||||||||||||| ||||    
T  32474622 ttggaaggtttatcgtgtgtttaattta-tttttggttggtttaagcattgtaaatgtctcctttgacagtagttacagtttaagata 32474536  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 32474438 - 32474380
Alignment:
Q  160 atgatatcatgaccagtgttgaccgctcatacgatccctgaaattattttgcagttttt 218  Q
    ||||||| |||| || |||||| |||| ||||||||||||||||||||||  |||||||    
T  32474438 atgatattatgatcattgttgatcgctgatacgatccctgaaattattttttagttttt 32474380  T

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Target: scaffold0376 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 7370 - 7265
Alignment:
Q  22 actgtggattgtggcgttacaccaaatgcttggacggtttatggtgtgtttaatgtcgtttttggtcggtttagaaatggtaaatgtttcctttgactgt 121  Q
    ||||||||| | || ||||||||||| | ||||| || ||||  ||||||||||| | | ||||||||| ||||  || ||||| ||| |||||||||||    
T  7370 actgtggatggaggtgttacaccaaaggtttggatggcttattatgtgtttaatg-catatttggtcggcttaggcattgtaaacgttccctttgactgt 7272  T
Q  122 agttaca 128  Q
    |||||||    
T  7271 agttaca 7265  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 21217471 - 21217423
Alignment:
Q  80 tttttggtcggtttagaaatggtaaatgtttcctttgactgtagttaca 128  Q
    ||||||||||||||||| ||  |||| ||||||||||| ||||||||||    
T  21217471 tttttggtcggtttagacattataaacgtttcctttgaatgtagttaca 21217423  T

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