View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20147_low_5 (Length: 475)
Name: NF20147_low_5
Description: NF20147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20147_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 39 - 460
Target Start/End: Original strand, 51706839 - 51707261
Alignment:
| Q |
39 |
ttatttattggactatgattgtactgttaaaatatactcgctacttgtttcagttttatctttcaattcaatgtgattttcatgtttacatatgatgatg |
138 |
Q |
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| T |
51706839 |
ttatttattggactatgattgtactgttaaaatatactcgctacttgtttcagttttatctttcaattcaatgtgattttcatgtttacatatgatgatg |
51706938 |
T |
|
| Q |
139 |
acaaaatgtccaccatgctattatgttatggaaa-cgcgttttacagcaacccacataattattgaagctctttcttcaattgttttgacgttaggtata |
237 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51706939 |
acaaaatgtccaccatgctattatgttatggaaaacgctttttacagcaaaccacataattattgaagctctttcttcaattgttttgacgttaggtata |
51707038 |
T |
|
| Q |
238 |
aattataggttaccaatttcctttttgtcattcctttcaaaatatcatgatgatattcagcaacgtgcatcatactttaggtgcaatcgttggagtgcca |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51707039 |
aattataggttaccaatttcctttttgtcattcctttcaaaatatcatgatgatattcagcaacgtgcatcatactttaggtgcaatcgttggagtgcca |
51707138 |
T |
|
| Q |
338 |
aaaaattcggtacaatagaagctaatcaagttgctcactatttagcaaaatatacattttctatttcttcttatgatgcttggattgaagaaacaccttg |
437 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51707139 |
aaaaattcgttacagtagaagctaatcaagttgctcactatttagcaaaatatacattttctatttcttcttatgatgcttggattgaagaaacaccttg |
51707238 |
T |
|
| Q |
438 |
tattgatgcaactgtggcctttg |
460 |
Q |
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| T |
51707239 |
tattgatgcaactgtggcctttg |
51707261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 354 - 436
Target Start/End: Original strand, 662714 - 662796
Alignment:
| Q |
354 |
agaagctaatcaagttgctcactatttagcaaaatatacattttctatttcttcttatgatgcttggattgaagaaacacctt |
436 |
Q |
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|||||||||||||| | | |||||||||||||||||| |||||||||||||||| ||| | ||||||| ||||||| |||| |
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| T |
662714 |
agaagctaatcaagctccacactatttagcaaaatatgtattttctatttcttctgatgttatttggattaaagaaacgcctt |
662796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 447
Target Start/End: Complemental strand, 19119741 - 19119648
Alignment:
| Q |
354 |
agaagctaatcaagttgctcactatttagcaaaatatacattttctatttcttcttatgatgcttggattgaagaaacaccttgtattgatgca |
447 |
Q |
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| T |
19119741 |
agaagctaatcaagctggccactatttagaaaaacatgcaatctctatttattccgatgttgcttggattgaagaaataccttgtatagatgca |
19119648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 436
Target Start/End: Original strand, 4523818 - 4523899
Alignment:
| Q |
354 |
agaagctaatcaagttgctcactatttagcaaaatatacattttctatttcttcttatgatgcttggattgaagaaacacctt |
436 |
Q |
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|||||||||||||| |||||||||||| ||||||||| || ||| ||||| || | || || |||||||||| ||||||||| |
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| T |
4523818 |
agaagctaatcaagctgctcactattttgcaaaatatgcaatttttattt-ttttgttgttgtttggattgaataaacacctt |
4523899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 458
Target Start/End: Complemental strand, 47488913 - 47488806
Alignment:
| Q |
354 |
agaagctaatcaagttgctcactatttagcaaaatatacattttctatttcttcttatgatgcttggattgaagaaacac---cttgtattgatgcaact |
450 |
Q |
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||||||||||||| |||| | | |||| |||||| | || ||||||||||||||||||||| |||||||||| ||| || |||||||||||||| | |
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| T |
47488913 |
agaagctaatcaaactgctaaatgtttaacaaaatgtgcaatttctatttcttcttatgatgtttggattgaaaaaataccttcttgtattgatgcagtt |
47488814 |
T |
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| Q |
451 |
gtggcctt |
458 |
Q |
| |
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|||||||| |
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| T |
47488813 |
gtggcctt |
47488806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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