View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20147_low_6 (Length: 457)
Name: NF20147_low_6
Description: NF20147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20147_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 37303729 - 37303295
Alignment:
| Q |
1 |
tgaaaatagcaccgaaccatcgtcgtttagggctaaagcattaaccgctgatttatgcttctccaaagttgcaactagaacgtgcnnnnnnncaccgacg |
100 |
Q |
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| T |
37303729 |
tgaaaatagcaccgaaccgtcgtcgtttagggctaaagcattaaccgctgatttatgcttctccaaagttgcaactagaacgtgctttttttcaccgacg |
37303630 |
T |
|
| Q |
101 |
ggtttcgcccaaacgcgtattcgtttatcggatgatcctgtgtacactgttccatcgttagaaactacaaccgcgttgaccgcatcttcgtgtgctttga |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37303629 |
ggtttcgcccaaacgcggattcgtttatcggatgatcctgtgtacactgttccatcgttagaaactgcaaccgcgttgaccgcatcttcgtgtgctttga |
37303530 |
T |
|
| Q |
201 |
gggattctaagcaacgaagatcagagattctccatattttgagtgttttgtcccatgaaaccgagtagataacgccgttggagactgtgaggtcggtgac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||| ||||||||||| |
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| T |
37303529 |
gggattctaagcaacgaagatcagagattctccatattttgagtgttttgtcccatgaaacggagtagataacgccgtttgaaactgcaaggtcggtgac |
37303430 |
T |
|
| Q |
301 |
agcgtcggcatgttcaatccatagacgttttacgtggcgacggatgttgatgtagttacttgggaggaggaaacggcggagacggtcgttgacagtggga |
400 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37303429 |
ggcgtcggcatgttcaatccagagacgttttacgtggcgacggatgttgatgtagttacttgggaggaggaaacggcggaaacggtcgttgacagtggga |
37303330 |
T |
|
| Q |
401 |
agagtggttaacttgcggtggttgttgttgttttt |
435 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| |
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| T |
37303329 |
agagtggttaacttccggtggttgttgttgttttt |
37303295 |
T |
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