View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20147_low_7 (Length: 454)

Name: NF20147_low_7
Description: NF20147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20147_low_7
NF20147_low_7
[»] chr4 (2 HSPs)
chr4 (16-415)||(10203208-10203607)
chr4 (86-247)||(49611797-49611958)
[»] chr6 (5 HSPs)
chr6 (16-439)||(1192733-1193158)
chr6 (28-423)||(1181821-1182213)
chr6 (32-355)||(896621-896952)
chr6 (23-284)||(1187038-1187296)
chr6 (74-247)||(1197319-1197492)
[»] chr8 (8 HSPs)
chr8 (158-247)||(5171560-5171649)
chr8 (83-244)||(5195020-5195180)
chr8 (83-244)||(1795823-1795983)
chr8 (83-240)||(5177584-5177740)
chr8 (83-240)||(5198910-5199066)
chr8 (158-240)||(5185100-5185182)
chr8 (179-247)||(5207113-5207181)
chr8 (158-225)||(6231610-6231677)
[»] chr7 (2 HSPs)
chr7 (158-240)||(5178792-5178874)
chr7 (109-247)||(8306682-8306820)
[»] chr5 (1 HSPs)
chr5 (188-244)||(14878124-14878180)


Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 16 - 415
Target Start/End: Original strand, 10203208 - 10203607
Alignment:
Q  16 atgaaaaggggcaaaagtgcatttatctccaaaatgtttataattaatgttttctgtggcttgtgaattctaactctattttgtttatcatctaaaacta 115  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10203208 atgaaaaggggtaaaagtgcatttatctccaaaatgtttataattaatgttttctgtggcttgtgagttctaactctattttgtttatcatctaaaacta 10203307  T
Q  116 cagtttttctatgagacgctaatgggnnnnnnngagaacgattgcttttgcatttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaag 215  Q
    |||||||| |||||||||||||||||       |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10203308 cagtttttttatgagacgctaatgggaaaaaaagagaacgattgcttttgcatttctactgaaactaagtgttggtggcatggcttgaaggatgtgaaag 10203407  T
Q  216 tcataagctctaagaagattgatgagaatgtttgttttaacacaattttagattcgtcgccagcttatgcaccaacttatccagatcaaacaaatattac 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10203408 tcataagctctaagaagattgatgagaatgtttgttttaacacaattttagattcgtcgccagcttatgcaccagcttatccagatcaaacaaatattac 10203507  T
Q  316 cttcaggctagaattttaattttgtttagaagtttaatattacctcttgaaaagaggtgcattctttttggttgaaaaatgttgaaaagaggtactatta 415  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||    
T  10203508 cttcaagctagaattttaattttgtttagaagtttaatattacctcttgaaaagaggtacattattttttgttgaaaaatgttgaaaagaggtactatta 10203607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 247
Target Start/End: Original strand, 49611797 - 49611958
Alignment:
Q  86 taactctattttgtttatcatctaaaactacagtttttctatgagacgctaatgggnnnnnnngagaacgattgcttttgcatttctgctgaaactaagt 185  Q
    ||||| ||||||||| ||  || |||||||||||||||||| ||||| |||||| |       ||  |||||||| |||||  ||||  ||| || ||||    
T  49611797 taactatattttgttaattgtccaaaactacagtttttctacgagacactaatgagaagaaaagacgacgattgcgtttgcggttctagtgataccaagt 49611896  T
Q  186 gttggtggcatggcttgaaggatgtgaaagtcataagctctaagaagattgatgagaatgtt 247  Q
    ||||||||||||||||||||||| ||||||||  ||  || ||||| |||||||||||||||    
T  49611897 gttggtggcatggcttgaaggatttgaaagtctcaacttcaaagaaaattgatgagaatgtt 49611958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 439
Target Start/End: Original strand, 1192733 - 1193158
Alignment:
Q  16 atgaaaaggggcaaaagtgcatttatctccaaaatgtttataattaatgttttctgtggcttgtgaattctaactctatttt-gtttatcatctaaaact 114  Q
    ||||||||||||||||||||||||| ||  ||||| ||||||||||||||| | |||||||||||| ||||||||||||||| |||||||||||||||||    
T  1192733 atgaaaaggggcaaaagtgcatttaactaaaaaatatttataattaatgttatgtgtggcttgtgagttctaactctatttttgtttatcatctaaaact 1192832  T
Q  115 acagtttttctatgagacgctaatgggnnnnnnngagaacgattgcttttgcatttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaa 214  Q
    ||||||||| |||||||||||||||||       |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1192833 acagtttttgtatgagacgctaatgggaaaaaaagagaacaattgcttttgcatttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaa 1192932  T
Q  215 gtcataagctctaagaagattgatgagaatgtttgttttaacacaattttagattcgtcgccagcttatgcaccaacttatccagatcaaacaaatatta 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||   | |  | ||| |||||||||||    
T  1192933 gtcataagctctaagaagattgatgagaatgtttgttttaacacaattttagattcatcgccagcttatgcaccagaatttgaacatcgaacaaatatta 1193032  T
Q  315 ccttcaggctagaattttaattttgtttagaagtttaatattacctcttgaaaagaggtgcattctttt-tggttgaaaaatgttgaaaagaggtactat 413  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  1193033 ccttcaggctagaattttaatgttgtttagaagtttgatattacctcttgaaaagaggtgcattcttttcatgttgaaaaatgttgaaaagaggtactat 1193132  T
Q  414 tattttgttctaactcccaggtattt 439  Q
    |||||||||| || ||||| ||||||    
T  1193133 tattttgttccaagtcccaagtattt 1193158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 28 - 423
Target Start/End: Original strand, 1181821 - 1182213
Alignment:
Q  28 aaaagtgcatttatctccaaaatgtttataattaatgttttctgtggcttgtgaattctaactctattttgtttatcatctaaaactacagtttttctat 127  Q
    ||||||||||||  ||||||||||||||||||||||||| | |||||||||||| |||| ||||||||||||||||||||||||||| ||| ||||||||    
T  1181821 aaaagtgcattttactccaaaatgtttataattaatgttatatgtggcttgtgagttctgactctattttgtttatcatctaaaactgcagattttctat 1181920  T
Q  128 gagacgctaatgggnnnnnnngagaacgattgcttttgcatttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaagtcataagctcta 227  Q
    |||||||||||| |       ||   |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  1181921 gagacgctaatgagaaaaaaaga---cgattgcttttgcatttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaagtcataagctcta 1182017  T
Q  228 agaagattgatgagaatgtttgttttaacacaattttagattcgtcgccagcttatgcaccaacttatccagatcaaacaaatattaccttcaggctaga 327  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  | | || ||||||||||||||||||||||||||||    
T  1182018 agaagattgatgagaatgtttgttttaacacaattttagattcatcgccagcttatgcaccaaaatttgcacatcaaacaaatattaccttcaggctaga 1182117  T
Q  328 attttaattttgtttagaagtttaatattacctcttgaaaagaggtgcattctttttggttgaaaaatgttgaaaagaggtactattattttgttc 423  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||    
T  1182118 attttaatgttgtttagaagtttgatattacctcttgaaaagaggtgcattcttttttgttgaaaaatgttgaaaagaggtgctattactttgttc 1182213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 32 - 355
Target Start/End: Original strand, 896621 - 896952
Alignment:
Q  32 gtgcatttatctccaaaatgtttataattaatgtt---ttctgtg--gcttgtgaattcta--actctattttgtttatcatctaaaactacagtttttc 124  Q
    ||||||||| ||||||||| |||||||||||||||   || ||||  |||||||| || ||  |||||||||||||||||||||||||||||||||||||    
T  896621 gtgcatttaactccaaaatatttataattaatgttatgttatgtgtagcttgtgagttgtataactctattttgtttatcatctaaaactacagtttttc 896720  T
Q  125 tatgagacgctaatgggnnnnnnngagaacgattgcttttgca---tttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaagtcataa 221  Q
    |||||||||||||||||        ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  896721 tatgagacgctaatgggaaaaaa--agaacgattgcttttgcagcatttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaagtcataa 896818  T
Q  222 gctctaagaagattgatgagaatgtttgttttaacacaattttagattcgtcgccagcttatgcaccaacttatccagatcaaacaaatattaccttcag 321  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||  |||||| |||||||||||||||||    
T  896819 gctctaaggagattgatgagaatgtttgttttaacacaattttagattcatcgccagcttatgcaccagcttatgaagatcacacaaatattaccttcag 896918  T
Q  322 gctagaattttaattttgtttagaagtttaatat 355  Q
     ||||||| |||||  ||||||||||||| ||||    
T  896919 tctagaatattaatgatgtttagaagtttgatat 896952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 23 - 284
Target Start/End: Original strand, 1187038 - 1187296
Alignment:
Q  23 ggggcaaaagtgcatttatctccaaaatgtttataattaatgttttctgtggcttgtgaattctaactctattttgtttatcatctaaaactacagtttt 122  Q
    ||||||||| || || || | ||||| |||| ||| |||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||||| ||||    
T  1187038 ggggcaaaactggatataaccccaaattgttaatacttaatgttttgtgtagcttatgacttctaactctattttgtttatcatctaaaactacaatttt 1187137  T
Q  123 tctatgagacgctaatgggnnnnnnngagaacgattgcttttgcatttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaagtcataag 222  Q
    ||||||||||||||||| |       |    ||||||||||||||||||| || | || ||||||||||||||||||||||||||||||||||||| |||    
T  1187138 tctatgagacgctaatgagaaaaaaagg---cgattgcttttgcatttcttctaatacgaagtgttggtggcatggcttgaaggatgtgaaagtcacaag 1187234  T
Q  223 ctctaagaagattgatgagaatgtttgttttaacacaattttagattcgtcgccagcttatg 284  Q
    ||||| ||||||||||||||||||||||||||| || ||||||||  || || |||||||||    
T  1187235 ctctatgaagattgatgagaatgtttgttttaagaccattttagaggcgccgtcagcttatg 1187296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 74 - 247
Target Start/End: Original strand, 1197319 - 1197492
Alignment:
Q  74 gcttgtgaattctaactctattttgtttatcatctaaaactacagtttttctatgagacgctaatgggnnnnnnngagaacgattgcttttgcatttctg 173  Q
    |||| ||| |||||||||||||||||| ||| || | ||||||||||||||||||||||| ||||| |        ||||||| |||||||||| |||||    
T  1197319 gcttttgacttctaactctattttgttaatcgtcgataactacagtttttctatgagacgttaatgagaaaaaaaaagaacgactgcttttgcagttctg 1197418  T
Q  174 ctgaaactaagtgttggtggcatggcttgaaggatgtgaaagtcataagctctaagaagattgatgagaatgtt 247  Q
     ||| || |||||||||||||||| ||||||||||||||||||||  ||| ||| |||||| ||||||||||||    
T  1197419 atgatacaaagtgttggtggcatgacttgaaggatgtgaaagtcacgagcactatgaagatcgatgagaatgtt 1197492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 158 - 247
Target Start/End: Original strand, 5171560 - 5171649
Alignment:
Q  158 tgcttttgcatttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaagtcataagctctaagaagattgatgagaatgtt 247  Q
    |||||||||||||||  ||| || ||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| |||||||||    
T  5171560 tgcttttgcatttcttgtgataccaagtgttggtggcatggcttgaaggatgtgaaagttacaagctctatgaagattgacgagaatgtt 5171649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 83 - 244
Target Start/End: Original strand, 5195020 - 5195180
Alignment:
Q  83 ttctaactctattttgtttatcatctaaaactacagtttttctatgagacgctaatgggnnnnnnngagaacgattgcttttgcatttctgctgaaacta 182  Q
    |||||||||||||| ||| ||||||| || || ||||| || ||||||||||||||||        | | | || |||||||||| ||||  ||| ||||    
T  5195020 ttctaactctattt-gttaatcatctgaatctgcagttcttatatgagacgctaatggaaagaaagggggatgactgcttttgcagttctagtgatacta 5195118  T
Q  183 agtgttggtggcatggcttgaaggatgtgaaagtcataagctctaagaagattgatgagaat 244  Q
    ||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||    
T  5195119 agtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaat 5195180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 83 - 244
Target Start/End: Complemental strand, 1795983 - 1795823
Alignment:
Q  83 ttctaactctattttgtttatcatctaaaactacagtttttctatgagacgctaatgggnnnnnnngagaacgattgcttttgcatttctgctgaaacta 182  Q
    |||||||||||||| ||| ||||||| || || ||| |||| ||||||||||||||||        | | | || ||||| |||| ||||  ||| ||||    
T  1795983 ttctaactctattt-gttaatcatctcaatctgcagcttttatatgagacgctaatggaaagaaaaggggatgactgcttgtgcagttctagtgatacta 1795885  T
Q  183 agtgttggtggcatggcttgaaggatgtgaaagtcataagctctaagaagattgatgagaat 244  Q
    ||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||    
T  1795884 agtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaat 1795823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 83 - 240
Target Start/End: Original strand, 5177584 - 5177740
Alignment:
Q  83 ttctaactctattttgtttatcatctaaaactacagtttttctatgagacgctaatgggnnnnnnngagaacgattgcttttgcatttctgctgaaacta 182  Q
    |||||||||||||| ||| ||||||| || || |||||||| ||||||||||||||||        | | | || ||||| |||| ||||  ||| ||||    
T  5177584 ttctaactctattt-gttaatcatctgaatctgcagtttttatatgagacgctaatggaaagaaagggggatgactgcttgtgcagttctagtgatacta 5177682  T
Q  183 agtgttggtggcatggcttgaaggatgtgaaagtcataagctctaagaagattgatga 240  Q
    ||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||    
T  5177683 agtgttggtggcatggcttgaagaatgtgaaagtcataagctcagtgaagattgatga 5177740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 83 - 240
Target Start/End: Complemental strand, 5199066 - 5198910
Alignment:
Q  83 ttctaactctattttgtttatcatctaaaactacagtttttctatgagacgctaatgggnnnnnnngagaacgattgcttttgcatttctgctgaaacta 182  Q
    |||||||||||||| ||| || |||||||  | |||||||| ||||||||||||||||        | | | || |||||||||| ||||  ||| ||||    
T  5199066 ttctaactctattt-gttaataatctaaatatgcagtttttatatgagacgctaatggaaagaaagggggatgactgcttttgcagttctagtgatacta 5198968  T
Q  183 agtgttggtggcatggcttgaaggatgtgaaagtcataagctctaagaagattgatga 240  Q
    ||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||    
T  5198967 agtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatga 5198910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 5185100 - 5185182
Alignment:
Q  158 tgcttttgcatttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaagtcataagctctaagaagattgatga 240  Q
    ||||| |||| ||||  ||| ||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||    
T  5185100 tgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcaatgaagattgatga 5185182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 5207113 - 5207181
Alignment:
Q  179 actaagtgttggtggcatggcttgaaggatgtgaaagtcataagctctaagaagattgatgagaatgtt 247  Q
    |||| ||||||||||||||||||||||||||| |||||||  ||||||| |||||||||||||||||||    
T  5207113 actaggtgttggtggcatggcttgaaggatgtaaaagtcacgagctctatgaagattgatgagaatgtt 5207181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 6231610 - 6231677
Alignment:
Q  158 tgcttttgcatttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaagtcataagctc 225  Q
    |||||||||| ||||  ||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  6231610 tgcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctc 6231677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 5178792 - 5178874
Alignment:
Q  158 tgcttttgcatttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaagtcataagctctaagaagattgatga 240  Q
    ||||| |||| ||||  ||| ||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||    
T  5178792 tgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcaatgaagattgatga 5178874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 109 - 247
Target Start/End: Original strand, 8306682 - 8306820
Alignment:
Q  109 aaaactacagtttttctatgagacgctaatgggnnnnnnngagaacgattgcttttgcatttctgctgaaactaagtgttggtggcatggcttgaaggat 208  Q
    |||||||||||||||||||||||| |||||| |       ||  |||| ||||||||||  |||  ||| || |||||||||||||||||||||||||||    
T  8306682 aaaactacagtttttctatgagactctaatgagaagaaaagacgacgactgcttttgcagctctaatgatacaaagtgttggtggcatggcttgaaggat 8306781  T
Q  209 gtgaaagtcataagctctaagaagattgatgagaatgtt 247  Q
     ||||||||| | |||| | ||| |||||||||||||||    
T  8306782 ttgaaagtcacacgctcaatgaaaattgatgagaatgtt 8306820  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 14878180 - 14878124
Alignment:
Q  188 tggtggcatggcttgaaggatgtgaaagtcataagctctaagaagattgatgagaat 244  Q
    ||||||||||||||||||||||| |||||||  ||| ||| ||| |||||| |||||    
T  14878180 tggtggcatggcttgaaggatgtaaaagtcactagcgctatgaatattgataagaat 14878124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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