View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20147_low_8 (Length: 448)
Name: NF20147_low_8
Description: NF20147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20147_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 13 - 431
Target Start/End: Complemental strand, 34655415 - 34654993
Alignment:
| Q |
13 |
atactaagtggcttaggagtaatcatgtaaattggaccgtaacatttgaagtaaatttgtaaaagtaatcctaagcttgaataata----gaatatcaat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34655415 |
atactaagtggcttaggagtaatcatgtaaattggaccgtagcatttaaagtaaatttgtaaaagtaatcctaagcttgaataatatatagaatatcaat |
34655316 |
T |
|
| Q |
109 |
gtagtcagagaacgtagacacaactggccgaaccctgagataaaatgttgtgttttctttgtttgcgtttttcgtatctatttacttttgaatcaaggtt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34655315 |
gtagtcagagaacgtagacacaactggccgagccctgagataaaatgttgtgttttctttgtttgcgtttttcgtatctgtttacttttgaatcaaggtt |
34655216 |
T |
|
| Q |
209 |
cttgttctaacgatgtgaatgatgattatatggttagatattgcaaatgagaaaactgggacgcgttcttttattaagaagaaactctacatggcaaata |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34655215 |
cttgttctaacgatgtgaatgatgattatatggttagatattgcaaatgagaaaactgggacgcgttcttttattaaaaagaaactctacatggcaaata |
34655116 |
T |
|
| Q |
309 |
ttggagcaaaaggaagtgttttaaggatcaagaaatatgcatttgatcttcttgcaatggcagatttgattgcacaagacacactcaactatgttaggag |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34655115 |
ttggagcaaaaggaagtgttttaaggatcaagaaatatgcatttgatcttcttgcaatggcggatttgattgcacaagacacactcaactatgttaggag |
34655016 |
T |
|
| Q |
409 |
gtacctaagactcaagtcaacat |
431 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
34655015 |
gtacctaagactcaagtcaacat |
34654993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 200
Target Start/End: Original strand, 3101700 - 3101737
Alignment:
| Q |
163 |
ttctttgtttgcgtttttcgtatctatttacttttgaa |
200 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
3101700 |
ttctttgtttgcgtttatcgtatctgtttacttttgaa |
3101737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 6263001 - 6263064
Alignment:
| Q |
156 |
ttgtgttttctttgtttgcgtttttcgtatctatttacttttgaatcaaggttcttgttctaac |
219 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||| |||||||| || | || |||||||||| |
|
|
| T |
6263001 |
ttgtgtgttctctgtttgcgtttttcgtatctattttcttttgaaccaggattgttgttctaac |
6263064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 33717265 - 33717198
Alignment:
| Q |
151 |
aaatgttgtgttttctttgtttgcgtttttcgtatctatttacttttgaatcaaggttcttgttctaa |
218 |
Q |
| |
|
|||| |||||| |||| ||||||| |||||||||||| |||||||||||| | |||| ||||||||| |
|
|
| T |
33717265 |
aaatcttgtgtgttctctgtttgcatttttcgtatctgtttacttttgaactagggttgttgttctaa |
33717198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 426
Target Start/End: Original strand, 4879799 - 4879848
Alignment:
| Q |
377 |
attgcacaagacacactcaactatgttaggaggtacctaagactcaagtc |
426 |
Q |
| |
|
||||||||| ||| |||||||||||| ||||||| | ||||||||||||| |
|
|
| T |
4879799 |
attgcacaaaacatactcaactatgtgaggaggtgcataagactcaagtc |
4879848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 5055884 - 5055928
Alignment:
| Q |
175 |
gtttttcgtatctatttacttttgaatcaaggttcttgttctaac |
219 |
Q |
| |
|
||||||||||||| |||||||||||| || |||| |||||||||| |
|
|
| T |
5055884 |
gtttttcgtatctttttacttttgaaccagggttgttgttctaac |
5055928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University