View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20148_high_20 (Length: 401)

Name: NF20148_high_20
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20148_high_20
NF20148_high_20
[»] chr3 (21 HSPs)
chr3 (15-386)||(22457829-22458200)
chr3 (15-386)||(22480810-22481181)
chr3 (15-386)||(22467291-22467662)
chr3 (15-386)||(22435971-22436342)
chr3 (15-386)||(22629786-22630152)
chr3 (115-386)||(22634946-22635217)
chr3 (61-386)||(22357388-22357713)
chr3 (15-278)||(22353155-22353415)
chr3 (15-386)||(22367264-22367635)
chr3 (61-386)||(22430556-22430881)
chr3 (61-334)||(22442128-22442401)
chr3 (60-386)||(22620269-22620595)
chr3 (64-386)||(22656443-22656765)
chr3 (114-282)||(37930298-37930467)
chr3 (121-384)||(30988739-30989002)
chr3 (91-279)||(22647588-22647776)
chr3 (169-332)||(21946445-21946608)
chr3 (64-323)||(22180247-22180506)
chr3 (169-279)||(21931295-21931405)
chr3 (124-258)||(22614708-22614842)
chr3 (248-334)||(22628096-22628182)
[»] chr1 (4 HSPs)
chr1 (60-324)||(34990046-34990310)
chr1 (60-279)||(34976245-34976464)
chr1 (60-279)||(34983356-34983575)
chr1 (170-332)||(2304969-2305131)
[»] chr7 (2 HSPs)
chr7 (113-187)||(872150-872224)
chr7 (113-187)||(1233427-1233501)
[»] chr5 (1 HSPs)
chr5 (121-321)||(40580766-40580966)


Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 15 - 386
Target Start/End: Original strand, 22457829 - 22458200
Alignment:
15 gaacctgtgagttttcaatattttccatgaaattatcagatctgattgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgct 114  Q
    |||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22457829 gaacctgtgagttttcaatattttccatcaaattgtcaaatctgattgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgct 22457928  T
115 aatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaatt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
22457929 aatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatgcaccagatcatgaacacaacaactttttgctcttccatcaatactaatt 22458028  T
215 gaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcag 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||    
22458029 gaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttaccatatcatctttcacaaatccttcag 22458128  T
315 ccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatacaacaaac 386  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
22458129 ccatccattgccgaatcagtatatttgtaggaactatacaaccttcaggatataatccaaaatacaacaaac 22458200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 15 - 386
Target Start/End: Original strand, 22480810 - 22481181
Alignment:
15 gaacctgtgagttttcaatattttccatgaaattatcagatctgattgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgct 114  Q
    |||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22480810 gaacctgtgagttttcaatattttccatcaaattgtcaaatctgattgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgct 22480909  T
115 aatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaatt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
22480910 aatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatgcaccagatcatgaacacaacaactttttgctcttccatcaatactaatt 22481009  T
215 gaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcag 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||    
22481010 gaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttaccatatcatctttcacaaatccttcag 22481109  T
315 ccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatacaacaaac 386  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
22481110 ccatccattgccgaatcagtatatttgtaggaactatacaaccttcaggatataatccaaaatacaacaaac 22481181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 15 - 386
Target Start/End: Original strand, 22467291 - 22467662
Alignment:
15 gaacctgtgagttttcaatattttccatgaaattatcagatctgattgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgct 114  Q
    |||| |||||||||||||||  || ||| |||||||||||  |  || |||||||||||||||||| ||| ||| |||||||  |||| |  |||||  |    
22467291 gaacatgtgagttttcaataactttcattaaattatcagaggtagtttctattgataggcgtcgaatcattccagttaaagacaattgtttgtcctcagt 22467390  T
115 aatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaatt 214  Q
    ||||||||||||||||||||| || ||| |||| |||||||||| |||||| |||||||||||||||| |||||||||| |||||||||||||||| |||    
22467391 aatattcttgcaaaaacttaaatcctcatatttatcaaggatcattgcatgcactagatcatgaacacgacaactttttactcttccatcaatacttatt 22467490  T
215 gaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcag 314  Q
    ||||||||||||||||||| ||||  |||||| ||| |||||||||| || ||||| |||||||||||  |  | || || || ||||| || |||||||    
22467491 gaaactacttgcaccaaacttctatggatcaactctattaaatatccttcagcaacctcttccaatgtcctccccctgtcttccttcacaaacccttcag 22467590  T
315 ccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatacaacaaac 386  Q
    | |||||||| ||| ||||  | |||| | |||||||| |  ||||||||||||||||||||||||| ||||    
22467591 caatccattggcgagtcaacgtctttgaatgaactatatagtcttcaggatataatccaaaatacaagaaac 22467662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 15 - 386
Target Start/End: Original strand, 22435971 - 22436342
Alignment:
15 gaacctgtgagttttcaatattttccatgaaattatcagatctgattgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgct 114  Q
    |||| |||||| ||||||||  |||||| | ||||| ||| ||| |||| |||||||||||||||  ||  | | |||||||  |||| |  |||||  |    
22435971 gaacatgtgagctttcaataccttccattagattataagaactggttgccattgataggcgtcgagtcactctagttaaagaaaattgattgtcctcagt 22436070  T
115 aatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaatt 214  Q
    ||||||||||||||||||||| || ||| |||| |||||||||| |||||| |||| ||||||||||| |||||||||| |||||||||||||||| |||    
22436071 aatattcttgcaaaaacttaaatcctcatatttctcaaggatcattgcatgcactaaatcatgaacacgacaactttttactcttccatcaatacttatt 22436170  T
215 gaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcag 314  Q
    |||||||| |||||||||| |||| ||| ||| ||| |||||||||| | ||||| ||||||||||||  || | || || ||||||||||| |||||||    
22436171 gaaactacatgcaccaaacttctattgaccaactctattaaatatccttttgcaatatcttccaatgtccttcccctctcttctttcacgaacccttcag 22436270  T
315 ccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatacaacaaac 386  Q
    | |||||||| ||| ||||| | |||| | |||||||| |  ||||||||||||||||||||||||| ||||    
22436271 caatccattggcgagtcaatgtttttgaacgaactatatagtcttcaggatataatccaaaatacaagaaac 22436342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 15 - 386
Target Start/End: Original strand, 22629786 - 22630152
Alignment:
15 gaacctgtgagttttcaatattttccatgaaattatcagatctgattgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgct 114  Q
    |||| ||||||||||||||| ||| ||| ||||||||||   |  |||||||||||||||||| || ||| ||| |||||||  |||| |  |||||  |    
22629786 gaacatgtgagttttcaatacttttcattaaattatcag---tagttgctattgataggcgtcaaatcattccagttaaagacaattgcttgtcctcaat 22629882  T
115 aatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaatt 214  Q
    ||||||||||||||||||||| || ||| |||| |||||||||| |||||| ||||||||||| |||| |||||||||| |||||||||  |||||  ||    
22629883 aatattcttgcaaaaacttaaatcctcatatttctcaaggatcattgcatgcactagatcatgtacacgacaactttttactcttccat--atacttgtt 22629980  T
215 gaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcag 314  Q
    ||||||||||||||||||| ||||| || ||| ||| |||||||||| ||| |||| |||||||||||| || |  |  | |||||||| || |||||||    
22629981 gaaactacttgcaccaaacttctacggaccaactctattaaatatccttctccaacctcttccaatgttcttcccttgacttctttcacaaacccttcag 22630080  T
315 ccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatacaacaaac 386  Q
    | |||||||| ||| |||| |  |||| | |||||||| |  |||||||||| |||||||||||||| ||||    
22630081 cgatccattggcgagtcaacacctttgaacgaactatatagtcttcaggatagaatccaaaatacaagaaac 22630152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 115 - 386
Target Start/End: Original strand, 22634946 - 22635217
Alignment:
115 aatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaatt 214  Q
    ||||||||||||||||||||| || | | |||| |||||||||| | |||| |||||||||||||| |  ||||||||| ||||||||||||||||| ||    
22634946 aatattcttgcaaaaacttaaatccttaaatttgtcaaggatcatttcatgcactagatcatgaacgcggcaactttttactcttccatcaatactagtt 22635045  T
215 gaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcag 314  Q
    ||||||||||||||||||| ||||  |||||| |||  ||||||||| |||||||| ||||| |||||  || | || || ||||||||||| |||||||    
22635046 gaaactacttgcaccaaacttctatggatcaactctactaaatatccttctgcaacctcttcaaatgtccttcccctgtcttctttcacgaacccttcag 22635145  T
315 ccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatacaacaaac 386  Q
    | |||||||| ||| ||||| | |||| | |||||||| |  ||||||||||||||||||||||||| ||||    
22635146 caatccattggcgagtcaatgtttttgaacgaactatatagtcttcaggatataatccaaaatacaagaaac 22635217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 61 - 386
Target Start/End: Original strand, 22357388 - 22357713
Alignment:
61 tgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaat 160  Q
    |||||||||||||||||||| ||| ||| |||||||  |||| |   ||||  ||||||||| |||||| ||||| |  | |  |||||||||||||| |    
22357388 tgctattgataggcgtcgaatcattccagttaaagacaattgtttgccctcagtaatattctcgcaaaagcttaaatgcttatgtttttcaaggatcatt 22357487  T
161 gcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatc 260  Q
     |||| |||||||||||||||| ||||| |||| |||||||||||||||| |||||| ||||||||||||||| ||||   || || ||| |||||||||    
22357488 tcatgcactagatcatgaacacgacaacgttttactcttccatcaatactgattgaatctacttgcaccaaacttctatgtattaactcttttaaatatc 22357587  T
261 catctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttc 360  Q
    | |||||||| |||||||  ||| || | | ||  | |||||| || |||||||| |||||||| ||| ||||| | |||| | ||||| || |  ||||    
22357588 cttctgcaacctcttccatcgttctttccccatattgtttcacaaacccttcagcaatccattgtcgagtcaatgtctttgaatgaactttatagtcttc 22357687  T
361 aggatataatccaaaatacaacaaac 386  Q
    ||||||||||||||||||||| ||||    
22357688 aggatataatccaaaatacaagaaac 22357713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 15 - 278
Target Start/End: Original strand, 22353155 - 22353415
Alignment:
15 gaacctgtgagttttcaatattttccatgaaattatcagatctgattgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgct 114  Q
    |||| ||||||||||||||| ||| ||| || |||||||| ||  |||||||||||||||||| || ||| ||| |||| ||   ||| |  | |||| |    
22353155 gaacatgtgagttttcaatacttttcattaacttatcagaactagttgctattgataggcgtcaaatcattccagttaatgacagttgtt--tgctcg-t 22353251  T
115 aatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaatt 214  Q
    ||||||||||||||||||||| || ||| |||||  |||||||| | |||| |||||||| ||||||| |||||||||| |||||||||||||||| | |    
22353252 aatattcttgcaaaaacttaaatcctcatattttctaaggatcatttcatgcactagatcgtgaacacgacaactttttactcttccatcaatactgact 22353351  T
215 gaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttcca 278  Q
    ||| ||||||||||||||| ||||  ||| || ||| |||||||||| |||||||| |||||||    
22353352 gaatctacttgcaccaaacttctatggattaactcttttaaatatccttctgcaacctcttcca 22353415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 15 - 386
Target Start/End: Original strand, 22367264 - 22367635
Alignment:
15 gaacctgtgagttttcaatattttccatgaaattatcagatctgattgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgct 114  Q
    |||| |||||| ||||||||  |||||| | ||||||||| ||   |||||||||||||||||||| ||| ||| || |||   ||||    |||||| |    
22367264 gaacatgtgagctttcaataccttccattagattatcagaacttgatgctattgataggcgtcgaatcattccagttgaaggcaattgtctgtcctcggt 22367363  T
115 aatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaatt 214  Q
    |||| |||||||||| ||||| || |||  ||| | |||||||| |||||| ||||||||||||||||  ||||| | | |||||||||||||| | ||     
22367364 aatactcttgcaaaagcttaaatcctcatgtttattaaggatcattgcatgcactagatcatgaacacggcaactgtctactcttccatcaatagtgatc 22367463  T
215 gaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcag 314  Q
      | ||||| ||||||||| ||||| |||||| ||| |||||| ||| |||||||| |||||||||||  || | || || |||||||| || |||||||    
22367464 ccatctactcgcaccaaacttctacggatcaactctattaaatgtccttctgcaacctcttccaatgtcattcccctttcttctttcacaaacccttcag 22367563  T
315 ccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatacaacaaac 386  Q
    | |||||||| ||| |||||||||||| | ||||  |  |  ||||||||||||||||||| ||||| ||||    
22367564 caatccattgacgagtcaatatatttgaacgaacatttgagtcttcaggatataatccaaagtacaagaaac 22367635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 61 - 386
Target Start/End: Original strand, 22430556 - 22430881
Alignment:
61 tgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaat 160  Q
    |||||||||||||||| ||| ||| ||| ||||| |  |||| |  | |||| | |||| ||| ||||| ||||| || ||| |||||| |||||||| |    
22430556 tgctattgataggcgttgaatcattccagttaaatacaattgattgttctcggtgatatacttacaaaagcttaaatcctcatattttttaaggatcatt 22430655  T
161 gcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatc 260  Q
     |||| |||||||||||||||| ||||||| || |||||||||||||||| |||||| ||||||||||||||| ||||  |||||| ||| |||||||||    
22430656 tcatgcactagatcatgaacacgacaacttcttactcttccatcaatacttattgaatctacttgcaccaaacttctatggatcaactctattaaatatc 22430755  T
261 catctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttc 360  Q
    | |||||||| |||| ||||||  || |  | |  |||||||| || |||||||| |||||||| | | | ||| | |||| |  ||||||| |  |||     
22430756 cttctgcaacctctttcaatgtccttcccgttttttctttcacaaacccttcagcaatccattgacaagttaatgtctttgaataaactatatagtcttt 22430855  T
361 aggatataatccaaaatacaacaaac 386  Q
    ||||||||||||||||||||| ||||    
22430856 aggatataatccaaaatacaagaaac 22430881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 61 - 334
Target Start/End: Original strand, 22442128 - 22442401
Alignment:
61 tgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaat 160  Q
    |||||||||||||||||||| ||| ||| |||||||  |||| |   ||||  ||||||||| |||||| ||||| |  | |  |||||||||||||| |    
22442128 tgctattgataggcgtcgaatcattccagttaaagacaattgttttccctcagtaatattctcgcaaaagcttaaatgcttatgtttttcaaggatcatt 22442227  T
161 gcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatc 260  Q
     |||| ||||||||||||||||  ||||||||| ||||||||||||||||  ||||||||||||||||||||| ||||| ||| ||  || |||||||||    
22442228 tcatgcactagatcatgaacacggcaactttttactcttccatcaatactggttgaaactacttgcaccaaacttctacagattaacacttttaaatatc 22442327  T
261 catctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaat 334  Q
    | |||||||| | |||||||||  || | | ||  |||||||| || |||||||| |||||||| ||| |||||    
22442328 cttctgcaaccttttccaatgtcctttccccatattctttcacaaacccttcagctatccattgacgagtcaat 22442401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 60 - 386
Target Start/End: Original strand, 22620269 - 22620595
Alignment:
60 ttgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaa 159  Q
    ||||||||||||||||||||   |   ||||||||||||| ||   ||| || ||||||| ||||||||||||||  || ||||| |||||||| ||||     
22620269 ttgctattgataggcgtcgagtaacttcacttaaagatgaatgacaatcttcactaatatacttgcaaaaacttagatcctcacacttttcaagtatcat 22620368  T
160 tgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatat 259  Q
       | | | |||||||||||| ||||||||||||| | ||||||| || || | ||||  |||||||||||||| ||||  |||||| |||||||| |||    
22620369 catacgtattagatcatgaacgcaacaactttttgtttttccatcgattcttagtgaagatacttgcaccaaacttctatggatcaactctgttaagtat 22620468  T
260 ccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaacctt 359  Q
    || |||||||| |||||||| || ||  | || || ||||| || || |||||||| |||||||||||||||||| | |||| |  |||| || || |||    
22620469 ccttctgcaacttcttccaaagtattccccctttcttcttttacaaacccttcagctatccattgccgaatcaatctctttgaatcaactttataatctt 22620568  T
360 caggatataatccaaaatacaacaaac 386  Q
    | |||||||||||||||||||| ||||    
22620569 ctggatataatccaaaatacaataaac 22620595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 64 - 386
Target Start/End: Original strand, 22656443 - 22656765
Alignment:
64 tattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgca 163  Q
    |||||||||||||||||  || ||||||| |||||| ||| ||||  | ||||||| |||||| |||||||| || ||||| |||||||||||||    |    
22656443 tattgataggcgtcgaataattccacttatagatgaatggccatctgcactaatatgcttgcagaaacttaaatcctcacacttttcaaggatcatcata 22656542  T
164 tggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccat 263  Q
    || | || |||||| |||||||||||||| | | |||| ||||| |||| |||   |||||| ||||||| ||  |  ||||| |||||||||||||| |    
22656543 tgtattaaatcatggacacaacaacttttagtttttccgtcaattctaactgaggatacttgtaccaaacatcggcgaatcaactctgttaaatatcctt 22656642  T
264 ctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcagg 363  Q
    ||||||| |||||||| |||||  | || || |||||||| || |||||||| ||||||||||| |||| | | ||||    ||||  | || |||| ||    
22656643 ctgcaacttcttccaaagttttccccctttcttctttcacaaaaccttcagctatccattgccgtatcactctctttgattcaacttcataatcttctgg 22656742  T
364 atataatccaaaatacaacaaac 386  Q
    ||||| |||||||||||||||||    
22656743 atatattccaaaatacaacaaac 22656765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 114 - 282
Target Start/End: Original strand, 37930298 - 37930467
Alignment:
114 taatattcttgcaaaaacttaattcttcacatttttc-aaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaa 212  Q
    ||||||||| |||||||||||| ||   | |||| || |||||||| | |||| |||||||||||||||| |||||||||| |||||||||||||||       
37930298 taatattctcgcaaaaacttaaatccataaatttgtcaaaggatcatttcatgcactagatcatgaacacgacaactttttactcttccatcaataccgg 37930397  T
213 ttgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgt 282  Q
    ||||||||||||||||||||| ||||| ||| || ||| |||||||||| || ||||| | |||||||||    
37930398 ttgaaactacttgcaccaaacttctacagattaactcttttaaatatccttccgcaaccttttccaatgt 37930467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 121 - 384
Target Start/End: Original strand, 30988739 - 30989002
Alignment:
121 cttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaact 220  Q
    |||||||||| |||| || ||| |||||||||||||||   |  | | |||||||||||||| ||||| ||| ||| | |||||||  ||||  |||  |    
30988739 cttgcaaaaatttaaatcctcaaatttttcaaggatcatatcgcgtattagatcatgaacacgacaacctttagctttaccatcaactctaaccgaagat 30988838  T
221 acttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatcc 320  Q
    ||||||||||| | ||||  |||||| |||||||||||||| |||||||| |||||||| || ||  | || || || |||||||| |||||||| | ||    
30988839 acttgcaccaagcttctatggatcaactctgttaaatatccttctgcaacgtcttccaaagtcttccctctttcctccttcacgaacccttcagctaccc 30988938  T
321 attgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatacaacaa 384  Q
    |||| ||||||||| | ||||    ||||  | || |||| ||||||| |||||||||||||||    
30988939 attgtcgaatcaatctctttgatttaacttcataatcttctggatatattccaaaatacaacaa 30989002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 279
Target Start/End: Original strand, 22647588 - 22647776
Alignment:
91 taaagatgattggtcatcctcgctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactt 190  Q
    |||||||||  | ||||| || ||||||| |||||| |||||||  || ||||  |||||||||||||    ||| |  |||||||||||||| ||||||    
22647588 taaagatgaaagatcatcttcactaatatgcttgcagaaacttatatcctcactcttttcaaggatcatcatatgtatcagatcatgaacacagcaactt 22647687  T
191 tttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaa 279  Q
    || | | |||||||||| |||| ||||  |||||| ||||||| ||||  |||||| || ||||||||||  |||||||| ||||||||    
22647688 ttagtttttccatcaattctaactgaagatacttgaaccaaacttctatggatcaactcagttaaatatcgttctgcaacttcttccaa 22647776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 169 - 332
Target Start/End: Complemental strand, 21946608 - 21946445
Alignment:
169 tagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgca 268  Q
    |||||||||||||| ||||| ||| ||| | |||||||| |||| ||||  |||||| ||||  | ||||  |||||| |||||||||||||| |||||     
21946608 tagatcatgaacacgacaacctttagctttaccatcaattctaagtgaagatacttgaaccaggcttctatggatcaactctgttaaatatccttctgcc 21946509  T
269 acatcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatca 332  Q
    || |||||||| || ||  | || || || ||||| || |||||||| |||||||| |||||||    
21946508 acttcttccaaagtcttccctctttcctccttcacaaacccttcagctatccattgtcgaatca 21946445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 323
Target Start/End: Complemental strand, 22180506 - 22180247
Alignment:
64 tattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgca 163  Q
    |||||||||||| ||||| || |||||||| |||   ||  |||| || ||||||| |||||||||| | || || |||  ||||| ||||||||   ||    
22180506 tattgataggcgccgaactattccacttaaggatatctgtccatcatcactaatatgcttgcaaaaattaaaatcctcatttttttgaaggatcatatca 22180407  T
164 tggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccat 263  Q
     | | |||||||||||||| ||||| ||| ||| | |||||||| ||||  |||  |||||| ||||  | ||||  |||||| ||||||| |||||| |    
22180406 cgtattagatcatgaacacgacaacctttagctttgccatcaattctaagcgaagatacttgaaccaggcttctatggatcaactctgttagatatccct 22180307  T
264 ctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatccatt 323  Q
    |||| || ||||||| ||||||| |  | || || ||||| || |||||||| |||||||    
22180306 ctgccacttcttccattgtttttcccttttcctccttcacaaacccttcagctatccatt 22180247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 279
Target Start/End: Complemental strand, 21931405 - 21931295
Alignment:
169 tagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgca 268  Q
    |||||||||||||| ||||| ||| ||| | |||||||| |||| ||||  |||||| || |  | ||||  |||||| |||||||||||||| |||||     
21931405 tagatcatgaacacgacaacctttagctttgccatcaattctaagtgaagatacttgaacgaggcttctatggatcaactctgttaaatatccttctgcc 21931306  T
269 acatcttccaa 279  Q
    || ||||||||    
21931305 acttcttccaa 21931295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 258
Target Start/End: Original strand, 22614708 - 22614842
Alignment:
124 gcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactact 223  Q
    |||||||||||| || | | ||||||||| |||||   || | | |||||||||||||| |||||||||  || ||||||||||| |||| |||   | |    
22614708 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatt 22614807  T
224 tgcaccaaacctctactgatcaaatctgttaaata 258  Q
    |||||||||| |||| | ||||| |||| ||||||    
22614808 tgcaccaaacttctattaatcaactctgataaata 22614842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 334
Target Start/End: Original strand, 22628096 - 22628182
Alignment:
248 tctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaat 334  Q
    |||||||||||||| ||||  || ||||| || |||||| | || || |||||||| ||||||||||| ||| |||| |||||||||    
22628096 tctgttaaatatccttctgtgacttcttcgaaagtttttcccctttcttctttcacaaatccttcagctatcaattgtcgaatcaat 22628182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 60 - 324
Target Start/End: Complemental strand, 34990310 - 34990046
Alignment:
60 ttgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaa 159  Q
    ||||||||||||||||||  |   | |||||||||||||| || || || ||  | | || ||||||||||||||| || ||||| |||||||||||||     
34990310 ttgctattgataggcgtctgatagttccacttaaagatgaatgatcgtcatcattgaaatgcttgcaaaaacttaaatcctcacacttttcaaggatcat 34990211  T
160 tgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatat 259  Q
       ||| |  ||||||||||||||||||||| | | | |||||||||| |||| |||   |||||||||||||| |||||  ||||| ||||||||||||    
34990210 catatgtatcagatcatgaacacaacaacttctagtttttccatcaatgctaactgaggatacttgcaccaaacttctacgaatcaactctgttaaatat 34990111  T
260 ccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattg 324  Q
    |  ||| |||| |||||||| || ||  | || || |||||||| || |||||||| ||||||||    
34990110 ctttcttcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatccattg 34990046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 60 - 279
Target Start/End: Complemental strand, 34976464 - 34976245
Alignment:
60 ttgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaa 159  Q
    |||||||||||||||||| ||   | |||||||||||||| ||  |||| ||  | | || ||||||||||||||| || ||||| |||||||||||||     
34976464 ttgctattgataggcgtctaatagttccacttaaagatgaatgaccatcttcattgaaatgcttgcaaaaacttaaatcctcacacttttcaaggatcat 34976365  T
160 tgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatat 259  Q
       | | |  ||||||||||||||||||||||| |   |||||||||| |||| |||   |||||||||||||| || ||  ||||| ||||||||||||    
34976364 catacgtatcagatcatgaacacaacaacttttaggctttccatcaattctaactgaggatacttgcaccaaacttcgacgaatcaactctgttaaatat 34976265  T
260 ccatctgcaacatcttccaa 279  Q
    || | |||||| ||||||||    
34976264 ccttttgcaacttcttccaa 34976245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 60 - 279
Target Start/End: Complemental strand, 34983575 - 34983356
Alignment:
60 ttgctattgataggcgtcgaaccatcccacttaaagatgattggtcatcctcgctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaa 159  Q
    |||||||||||||||||| ||   | |||||||||||||| ||  |||| ||  | | || ||||||||||||||| || ||||| |||||||||||||     
34983575 ttgctattgataggcgtctaatagttccacttaaagatgaatgaccatcttcattgaaatgcttgcaaaaacttaaatcctcacacttttcaaggatcat 34983476  T
160 tgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatat 259  Q
       | | |  ||||||||||||||||||||||| |   |||||||||| |||| |||   |||||||||||||| || ||  ||||| ||||||||||||    
34983475 catacgtatcagatcatgaacacaacaacttttaggctttccatcaattctaactgaggatacttgcaccaaacttcgacgaatcaactctgttaaatat 34983376  T
260 ccatctgcaacatcttccaa 279  Q
    || | |||||| ||||||||    
34983375 ccttttgcaacttcttccaa 34983356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 170 - 332
Target Start/End: Original strand, 2304969 - 2305131
Alignment:
170 agatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaa 269  Q
    ||||||||||||||||||||||| | | |||||||||| |||| |||   |||||||||||||| || ||  ||||| |||| ||||||||| |||||||    
2304969 agatcatgaacacaacaacttttagattttccatcaatgctaactgaggatacttgcaccaaacttcgacgaatcaactctgataaatatccttctgcaa 2305068  T
270 catcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatca 332  Q
    | |||||||| || ||  | || || || ||||| || |||||||| ||||| || |||||||    
2305069 cttcttccaaagtcttcccactttcctccttcacaaacccttcagctatccactgtcgaatca 2305131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 872150 - 872224
Alignment:
113 ctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaa 187  Q
    ||||||| |||||||||| |||| || ||| ||||||||||||||||  |||| | |||||||||||||| ||||    
872150 ctaatatgcttgcaaaaatttaaatcctcaaatttttcaaggatcaaatcatgtagtagatcatgaacacgacaa 872224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 1233427 - 1233501
Alignment:
113 ctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaa 187  Q
    ||||||| |||||||||| |||| || ||| ||||||||||||||||  |||| | |||||||||||||| ||||    
1233427 ctaatatgcttgcaaaaatttaaatcctcaaatttttcaaggatcaaatcatgtagtagatcatgaacacgacaa 1233501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 321
Target Start/End: Complemental strand, 40580966 - 40580766
Alignment:
121 cttgcaaaaacttaattcttcacatttttcaaggatcaatgcatggactagatcatgaacacaacaactttttgctcttccatcaatactaattgaaact 220  Q
    |||||||||||||||||| ||||| |||||| ||||||    | | |  | ||| |||||| |||||||||| | | |||||||||| ||||||||   |    
40580966 cttgcaaaaacttaattcctcacacttttcatggatcatcatacgtatcaaatcgtgaacaaaacaacttttagtttttccatcaattctaattgaggat 40580867  T
221 acttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatcc 320  Q
    |||||||||||||  | ||  ||||| || ||||||||| | || ||||| |||||||| || ||| | || || || ||||| || |||||||| ||||    
40580866 acttgcaccaaactacgacgaatcaactcagttaaatatacttcagcaacttcttccaaagtctttccactttcctccttcacaaacccttcagctatcc 40580767  T
321 a 321  Q
    |    
40580766 a 40580766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University