View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20148_high_32 (Length: 337)
Name: NF20148_high_32
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_high_32 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 45646673 - 45646369
Alignment:
| Q |
18 |
aaaatcccaggactcaacacacttggtgtgtcattggcacgtattgactatgctgtaggtggactgaacccacctcacactcacccacgtgcaactgaga |
117 |
Q |
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| T |
45646673 |
aaaatcccaggactcaacacacttggtgtgtcattggcacgtattgactatgctgtaggtggactgaacccacctcacactcacccacgtgcaactgaga |
45646574 |
T |
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| Q |
118 |
ttgtttatgttcttgaaggtcaattagatgttgggttcataacaacagctaatgttttgatatcaaagactattgttaagggtgaaacatttgtgtttcc |
217 |
Q |
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| T |
45646573 |
ttgtttatgttcttgaaggtcaattagatgttgggttcataacaacagctaatgttttgatatcaaagactattgttaagggtgaaacatttgtgtttcc |
45646474 |
T |
|
| Q |
218 |
taaaggattggttcatttccaaaagaacagtggttatgtacctgctgcagtgattgcaggattcaatagtcaattgcaaggaacagtgaatattcctctt |
317 |
Q |
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| T |
45646473 |
taaaggattggttcatttccaaaagaacagtggttatgtacctgctgcagtgattgcaggattcaatagtcaattgcaaggaacagtgaatattcctctt |
45646374 |
T |
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| Q |
318 |
acttt |
322 |
Q |
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| T |
45646373 |
acttt |
45646369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 24 - 263
Target Start/End: Original strand, 38013296 - 38013535
Alignment:
| Q |
24 |
ccaggactcaacacacttggtgtgtcattggcacgtattgactatgctgtaggtggactgaacccacctcacactcacccacgtgcaactgagattgttt |
123 |
Q |
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| T |
38013296 |
ccaggactcaacactcttggtgtgtctctgtcaaggattgattatgccccaggtggcctcaacccacctcacactcacccacgcgccaccgaggtggtgt |
38013395 |
T |
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| Q |
124 |
atgttcttgaaggtcaattagatgttgggttcataacaacagctaatgttttgatatcaaagactattgttaagggtgaaacatttgtgtttcctaaagg |
223 |
Q |
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| T |
38013396 |
ttgtgcttgaaggccaactagatgttgggttcataaccacagccaatgtgctcatatcaaagactattagcaagggtgagatatttgtgttcccaaaagg |
38013495 |
T |
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| Q |
224 |
attggttcatttccaaaagaacagtggttatgtacctgct |
263 |
Q |
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| T |
38013496 |
cttagttcacttccaaaagaacaatgccaatgtacctgct |
38013535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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