View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20148_high_33 (Length: 334)
Name: NF20148_high_33
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 6 - 318
Target Start/End: Original strand, 34875622 - 34875934
Alignment:
| Q |
6 |
acaacaaaatgcaatatgtaaataaatcatcaacaaggaataattccaagttctttcaagatttatacatatacaaaaacataacaaaaaccagttacct |
105 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34875622 |
acaacaaaatgaaatatgtaaataaatcatcaacaaggaataattccaagttctttcaagatttatacatatacaaaaacataacaaaaaatagttacct |
34875721 |
T |
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| Q |
106 |
caacagatacatcagtatcccatgcatccttgtattgatcataacgcggtgacacagtcataacacggtgcccatttccctaaaataattaaattatcac |
205 |
Q |
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| T |
34875722 |
caacagatacatcagtatcccatgcatccttgtattgatcataacgcggtgacacagtcataacacggtgcccatttccctaaaataattaaattatcac |
34875821 |
T |
|
| Q |
206 |
aaaatcatcatcaggtaacaattaccaaaagtaaaacacaataaaaagaatagtatgtgtctatgcaacacgaacatttcagattgaagttgtgtctatg |
305 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34875822 |
aaaatcatcatcaagtaacaattaccaaaagtaaaacacaataaaaagaatagtatgtgtctatgcaacacgaacatttcagattgaagttgtgtctatg |
34875921 |
T |
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| Q |
306 |
ttcacaaacacgt |
318 |
Q |
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||||||||||||| |
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| T |
34875922 |
ttcacaaacacgt |
34875934 |
T |
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