View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20148_high_35 (Length: 325)
Name: NF20148_high_35
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 24 - 313
Target Start/End: Complemental strand, 40115585 - 40115296
Alignment:
| Q |
24 |
ccattactcatactggtaagataattttaccattgaaaagaagcactctccaccttcataaagttcttcatgttccgaatatcacttgcaagttattgtc |
123 |
Q |
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| T |
40115585 |
ccattactcatactggtaagataattttaccattgaaaagaagcactctccaccttcataaagttcttcatgttccaaatatcacttgcaagttattgtc |
40115486 |
T |
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| Q |
124 |
tgtctcacatttatgcaaaactaaccttatatccattgaannnnnnnctgattattttttggtgaaggatttgaagacaagggagcctcttctaaaagga |
223 |
Q |
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| T |
40115485 |
tgtctcacatttatgcaaaactaaccctatatccattgaatttttttctgattattttttggtgaaggatttgaagacaagggagcctcttctaaaagga |
40115386 |
T |
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| Q |
224 |
ttgcataaggatggtctctaccacattccaaagccacccaccaccagcttcataacttcactcgccactaatccaccttggcatcatatt |
313 |
Q |
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| T |
40115385 |
ttgcataaggatggtctctaccacattccaaagccacccaccaccagcttcataacttcactcgccactactccaccttggcatcatatt |
40115296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 9007300 - 9007211
Alignment:
| Q |
141 |
aaactaaccttatatccattgaannnnnnnctgattattttttggtgaaggatttgaagacaagggagcctcttctaaaaggattgcata |
230 |
Q |
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| T |
9007300 |
aaactaaccctatttccattgaatttttttctgattgttttttggtgaaggatttgaagacaaaggagcctctcctcaaaggactgcata |
9007211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 42361002 - 42360930
Alignment:
| Q |
172 |
tgattattttttggtgaaggatttgaagacaagggagcctcttctaaaaggattgcataaggatggtctctac |
244 |
Q |
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| T |
42361002 |
tgattattacttggtaaaggacttgaagacaagggctcctcttataaaaggaatgcataaggatgggctctac |
42360930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 244
Target Start/End: Original strand, 3017100 - 3017270
Alignment:
| Q |
74 |
caccttcataaagttcttcatgttccgaatatcacttgcaagttattgtctgtctcacatttatgcaaaactaaccttatatccattgaannnnnnnctg |
173 |
Q |
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| T |
3017100 |
caccttcccaaagtccttcatgtccctcatatttcttgcaaattattatctgtctccaacttatgcaagactaacccaatttctattgaattctttcatg |
3017199 |
T |
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| Q |
174 |
attattttttggtgaaggatttgaagacaagggagcctcttctaaaaggattgcataaggatggtctctac |
244 |
Q |
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| T |
3017200 |
attattacttggtaaaggacttgaagacaagggctcctcttctaaaaggattgcataaggatgggctctac |
3017270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 206
Target Start/End: Complemental strand, 9038459 - 9038424
Alignment:
| Q |
171 |
ctgattattttttggtgaaggatttgaagacaaggg |
206 |
Q |
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| T |
9038459 |
ctgatttttttttggtgaaggatttgaagacaaggg |
9038424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 249
Target Start/End: Complemental strand, 3703363 - 3703285
Alignment:
| Q |
171 |
ctgattattttttggtgaaggatttgaagacaagggagcctcttctaaaaggattgcataaggatggtctctaccacat |
249 |
Q |
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| T |
3703363 |
ctgattgttttttgattaaggatttgaagacaagggtgcccattctaagaggacggcataacaatggactctaccacat |
3703285 |
T |
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