View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20148_high_36 (Length: 322)
Name: NF20148_high_36
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 23 - 317
Target Start/End: Original strand, 45162008 - 45162302
Alignment:
| Q |
23 |
accgtactgcttttgttctctaatgaagaggacgcgtttttgtgaaaataaaaagccaaattaattttgtttgaactttgtaaatcgtattaatatcact |
122 |
Q |
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| T |
45162008 |
accgtactgcttttgttctctaatgaagaagacgcgtttttgtgaaaataaaaagccaaattaattttgtttgaactttgtaaatcgtattaatatcact |
45162107 |
T |
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| Q |
123 |
ttcttaagatcgtacatatctatcttcattataggcatataggctctgtatgcaagttgttatcatgttgtacaatgtggtccaaaccaattaagcatgg |
222 |
Q |
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| T |
45162108 |
ttctcaagatcgtacagatctatcttcattataggcatatacgctctgtatgcaagttgttatcatgttgtacaatgtggtccaaaccaattaagcatgg |
45162207 |
T |
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| Q |
223 |
aagtttgcataataagatcaatcaaaagatatcgtaaggctctaatgtatgaactacagtgcaattcttggtttgtcttttgtttctgtgctcct |
317 |
Q |
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| T |
45162208 |
aagtttgcataataagatcaatcaaaagatatcgtaaggctctaatgtatgaactacagtgcaattcttggtttgtcttttgtttctgtgctcct |
45162302 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 16051896 - 16051859
Alignment:
| Q |
154 |
taggcatataggctctgtatgcaagttgttatcatgtt |
191 |
Q |
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| T |
16051896 |
taggcttataggctctgtatgcaagttgttatcatgtt |
16051859 |
T |
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