View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20148_high_37 (Length: 313)
Name: NF20148_high_37
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_high_37 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 43633442 - 43633724
Alignment:
| Q |
19 |
ggtgttttatttgttatgcatgtattcctcaggtatcaagaaatattaactgatcctagttatgctggccagtttgtgctcatgacaaatccacatattg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43633442 |
ggtgttttatttgttatgcatgtattcctcaggtatcaagaaattttaactgatcctagttatgctggccagtttgtgctcatgacaaatccacatattg |
43633541 |
T |
|
| Q |
119 |
ggaatactggcataaattttggtttgtatctatttatttatatactaattataatcacttgaatccttgtgcttagagtccattttaaaaaccatctttt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43633542 |
ggaatactggcataaattttggtttgtatctatttatttatatactaattataatcacttaaatccttgtgcttagagtccattttaaaaaccatctttt |
43633641 |
T |
|
| Q |
219 |
gattcattgtctgtcagatgatgaagaatcaacagagtgcttcctttccggtctagtaattagaagtttgagtatcaggttct |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43633642 |
gattcattgtctgtcagatgatgaagaatcaacagagtgcttcctttccggtctagtaattagaagtttgagtatcaggttct |
43633724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 27 - 299
Target Start/End: Original strand, 42961675 - 42961938
Alignment:
| Q |
27 |
atttgttatgcatgtattcctcaggtatcaagaaatattaactgatcctagttatgctggccagtttgtgctcatgacaaatccacatattgggaatact |
126 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
42961675 |
atttgttatgtctgtgttcctcaggtatcaagaaattttaactgatcctagttatgctggacagtttgttctcatgacaaatccgcatattgggaatact |
42961774 |
T |
|
| Q |
127 |
ggcataaattttggtttgtatctatttatttatatactaattataatcacttgaatccttgtgcttagagtccattttaaaaaccatcttttgattcatt |
226 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| | |||| |||| |||||||||||| || ||| || |||||||||||| | |||| || || |
|
|
| T |
42961775 |
ggcataaattttggttggtatc----tatttatattc-aatt---ctcacctgaatccttgtgtttcgaggccgttttaaaaacca-cctttgttttgtt |
42961865 |
T |
|
| Q |
227 |
gtctgtcagatgatgaagaatcaacagagtgcttcctttccggtctagtaattagaagtttgagtatcaggtt |
299 |
Q |
| |
|
||||||||||||| || |||||||| ||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42961866 |
gtctgtcagatgacgaggaatcaacgcagtgctttctttctggtctagtaattagaagtttgagtatcaggtt |
42961938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University