View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20148_high_44 (Length: 275)
Name: NF20148_high_44
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_high_44 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 4 - 275
Target Start/End: Complemental strand, 52953747 - 52953476
Alignment:
| Q |
4 |
atcattcttacttctagacttaacaaacctttgattctcataaccattaaccaaatcaaagcaatgcattcaacccctattcaatttcttaccattcaaa |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
52953747 |
atcattcttacttctagacttaacaaacctttgattctcatatccattaaccaaatcaaagcaatgcatgcaacctctattcaatttcttaccattcaaa |
52953648 |
T |
|
| Q |
104 |
cactcaaaattcttacaactaaaaccactccaattaacagttttgttactaacaggcttccaaagtgaagttggaaaaggatgaagataatttaccttag |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52953647 |
cactcaaaattcttacaactaaaaccactccaattaacagttttgttactaacaggcttccaaagtgaagttggaaaaggatgaagataatttaccttag |
52953548 |
T |
|
| Q |
204 |
aagaaacagatttagcaaaacaccttcttctaggtaaaggctcacaccttttcaaaatcaatttctgtgcaa |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
52953547 |
aagaaacagatttagcaaaacaccttcttctaggtaaaggctcacaccttttcgaaatcaatttctgtgcaa |
52953476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 4 - 270
Target Start/End: Original strand, 31903779 - 31904045
Alignment:
| Q |
4 |
atcattcttacttctagacttaacaaacctttgattctcataaccattaaccaaatcaaagcaatgcattcaacccctattcaatttcttaccattcaaa |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31903779 |
atcattcttacttctagacttaacaaacctttgattctcataaccattaaccaaatcaaagcaatgcatgcaacccctattcaatttcttaccattcaaa |
31903878 |
T |
|
| Q |
104 |
cactcaaaattcttacaactaaaaccactccaattaacagttttgttactaacaggcttccaaagtgaagttggaaaaggatgaagataatttaccttag |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31903879 |
cactcaaaattcttacaactaaaaccactccaattaacagttttgttactaacaggtttccaaagtgaagttggaaaaggatgaagataatttaccttag |
31903978 |
T |
|
| Q |
204 |
aagaaacagatttagcaaaacaccttcttctaggtaaaggctcacaccttttcaaaatcaatttctg |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
31903979 |
aagaaacagatttagcaaaacaccttcttcttggtaaaggctcacaccctttcaaaatcaatttctg |
31904045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 31673760 - 31673573
Alignment:
| Q |
4 |
atcattcttacttctagacttaacaaacctttgattctcataaccattaaccaaatcaaagcaatgcattcaacccctattcaatttcttaccattcaaa |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31673760 |
atcattcttacttctagacttaacaaacctttgattctcataaccattaaccaaatcaaagcaatgcatgcaacccctattcaatttcttaccattcaaa |
31673661 |
T |
|
| Q |
104 |
cactcaaaattcttacaactaaaaccactccaattaacagttttgttactaacaggcttccaaagtgaagttggaaaaggatgaagat |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31673660 |
cactcaaaattcttacaactaaaaccactccaattaacagttttgttgctaacaggtttccaaagtgaagttggaaaaggatgaagat |
31673573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 32 - 191
Target Start/End: Original strand, 31921942 - 31922101
Alignment:
| Q |
32 |
ctttgattctcataaccattaaccaaatcaaagcaatgcattcaacccctattcaatttcttaccattcaaacactcaaaattcttacaactaaaaccac |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31921942 |
ctttgattctcataaccattaaccaaatcaaagcaatgcatgcaacccctattcaatttcttaccattcaaacactcaaaattcttacaactaaaaccac |
31922041 |
T |
|
| Q |
132 |
tccaattaacagttttgttactaacaggcttccaaagtgaagttggaaaaggatgaagat |
191 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31922042 |
tccaattaacagttttgttactaacaggtttccaaagtgaagttggaaaaggatgaagat |
31922101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 270
Target Start/End: Complemental strand, 7760621 - 7760358
Alignment:
| Q |
4 |
atcattcttacttctagacttaacaaacctttgattctcata---accattaaccaaatcaaagcaatgcattcaacccctattcaatttcttaccattc |
100 |
Q |
| |
|
|||||| |||||| | ||||| ||||| || |||||||||| |||| ||||||||||||| |||| | ||| | ||| |||||||||| || ||| |
|
|
| T |
7760621 |
atcatttttactttttgacttcacaaatctctgattctcatttccaccactaaccaaatcaaaacaattaacacaatctctactcaatttctttcctttc |
7760522 |
T |
|
| Q |
101 |
aaacactcaaaattcttacaactaaaaccactccaattaacagttttgttactaacaggcttccaaagtgaagttggaaaaggatgaagataatttacct |
200 |
Q |
| |
|
||||| |||||| |||||||| | |||||||||||||||| ||| || |||| || |||||||||||| ||| ||||||||| || | | | | | |
|
|
| T |
7760521 |
aaacattcaaaactcttacaattcaaaccactccaattaaaagtgttattaccaagaggcttccaaagagaaacaggaaaagga--aaaaaacctgattt |
7760424 |
T |
|
| Q |
201 |
tagaagaaacagatttagcaaaacaccttcttctaggtaaaggctcacaccttttcaaaatcaatttctg |
270 |
Q |
| |
|
| ||||||| ||| | |||||||||||||||||||||||||||||||| ||| || |||| |||||| |
|
|
| T |
7760423 |
t----gaaacagtttttgaaaaacaccttcttctaggtaaaggctcacacccttttaagatcagtttctg |
7760358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 157
Target Start/End: Complemental strand, 28960035 - 28959879
Alignment:
| Q |
4 |
atcattcttacttctagacttaacaaacctttgattctcata---accattaaccaaatcaaagcaatgcattcaacccctattcaatttcttaccattc |
100 |
Q |
| |
|
|||||| |||||| | ||||| ||||| || |||||||||| |||| ||||||||||||| |||| | ||| | ||| |||||||||| || ||| |
|
|
| T |
28960035 |
atcatttttactttttgacttcacaaatctctgattctcatttccaccactaaccaaatcaaaacaattaacacaatctctactcaatttctttcctttc |
28959936 |
T |
|
| Q |
101 |
aaacactcaaaattcttacaactaaaaccactccaattaacagttttgttactaaca |
157 |
Q |
| |
|
||||| |||||| |||||||| | |||||||||||||||| ||| || |||| |||| |
|
|
| T |
28959935 |
aaacattcaaaactcttacaattcaaaccactccaattaaaagtgttattaccaaca |
28959879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University