View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20148_high_45 (Length: 268)
Name: NF20148_high_45
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_high_45 |
 | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 29013088 - 29012841
Alignment:
| Q |
1 |
atgcaggtttcagcggcaagaagaaggaactgtcgtggcattgcgtcgaaggttgtggtgcttgttgtaagcttcaaaaaggtccttcttatccatctcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29013088 |
atgcaggtttcagcggcaagaagaaggaactgtcgtggcattgcgtggaaggttgtggtgcttgttgtaagcttcaaaaaggtccttcttatccatctcc |
29012989 |
T |
|
| Q |
101 |
tgaagaaattttcaccgaccctttagatgttgaggtccattttcctatgttttataagttttaatttgtagtaaattgacctatgtacattctatttagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29012988 |
tgaagaaattttcaccgaccctttagatgttgaggtccattttcctatgttttataagttttaatttgtagtaaattgacctatgtacattctatttagt |
29012889 |
T |
|
| Q |
201 |
gtgtattattataatgaattaatgatgattagtatttgtctttgacat |
248 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29012888 |
gtttattattataatgaattaatgatgattagtatttgtctttgacat |
29012841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 31806 - 31958
Alignment:
| Q |
1 |
atgcaggtttcagcggcaagaagaaggaactgtcgtggcattgcgtcgaaggttgtggtgcttgttgtaagcttcaaaaaggtccttcttatccatctcc |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31806 |
atgcaggtttcagcggcgagaagaaggaattgtcgtggcattgcgtggaaggttgtgctgcttgttgtaagcttcaaaaaggtccttcttatccatctcc |
31905 |
T |
|
| Q |
101 |
tgaagaaattttcaccgaccctttagatgttgaggtccattttcctatgtttt |
153 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31906 |
tgaagaaattttcaccgacccttcagatgttgaggtccattttcctatgtttt |
31958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University