View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20148_high_49 (Length: 248)
Name: NF20148_high_49
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_high_49 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 14 - 248
Target Start/End: Complemental strand, 47081107 - 47080873
Alignment:
| Q |
14 |
tactagaaatagattttgaattgtgtttatttaccttccacaagtatgcaaaaagtgatggagggtctatcacaaatgctttgcttaaccgtcctggata |
113 |
Q |
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| T |
47081107 |
tactagaaatagattttgaattgtgtttatttaccttccacaagtatgcaaaaagtgatggagggtctatcacaaatgctttgcttaaccgtcctggata |
47081008 |
T |
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| Q |
114 |
gtactcacccacaattttcaatgctcccaacaacaagttcataaatccagatgctgatctgtaaaagcctgtaatgccatccgttcaattaaacatggtt |
213 |
Q |
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| T |
47081007 |
gtactcacccacaattttcaatgctcccaacaacaagttcataaatccagatgctgatctgtaaaagcctgtaatgtaatgagttcaattaaacatggtt |
47080908 |
T |
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| Q |
214 |
agttaaatgaagtaattaataaagaaaggctgata |
248 |
Q |
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| T |
47080907 |
agttaaatgtagtaattaataaagaaagggtgata |
47080873 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 189
Target Start/End: Original strand, 3761742 - 3761845
Alignment:
| Q |
86 |
caaatgctttgcttaaccgtcctggatagtactcacccacaattttcaatgctcccaacaacaagttcataaatccagatgctgatctgtaaaagcctgt |
185 |
Q |
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| T |
3761742 |
caaacgctttgcttagctgttctgaatagtattgacccacaattttcggtgctcctgataataggttcataaattcagatgctgatatgtaaaagcatgt |
3761841 |
T |
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| Q |
186 |
aatg |
189 |
Q |
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| T |
3761842 |
aatg |
3761845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 57
Target Start/End: Complemental strand, 7516264 - 7516234
Alignment:
| Q |
27 |
ttttgaattgtgtttatttaccttccacaag |
57 |
Q |
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| T |
7516264 |
ttttgaattgtgtttatttaccttccacaag |
7516234 |
T |
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