View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20148_high_51 (Length: 240)

Name: NF20148_high_51
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20148_high_51
NF20148_high_51
[»] chr8 (2 HSPs)
chr8 (1-183)||(10854291-10854473)
chr8 (194-223)||(10854504-10854533)
[»] chr7 (2 HSPs)
chr7 (1-183)||(9269548-9269730)
chr7 (195-223)||(9269488-9269516)
[»] chr1 (4 HSPs)
chr1 (29-73)||(23733639-23733683)
chr1 (29-73)||(23740831-23740875)
chr1 (29-72)||(23616982-23617025)
chr1 (29-72)||(23648323-23648366)


Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 10854291 - 10854473
Alignment:
Q  1 aataaactaatctaactacatacaatattccatattccagatttacaaacatattgataactatatctcatgaatctcttattttgtttcttcaattgcc 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  10854291 aataaactaatctaactacatacaatattccatattccatattcacaaacatattgataactatatctcatgaatctcttattttgtttctccgattgcc 10854390  T
Q  101 tgtgtttatcgatcaattgagttgtgtcggatagaattggggcttatgaaataataacattatcggtgagttgatttgttaaa 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10854391 tgtgtttatcgatcaattgagttgtgtcggatagaattggggcttatgaaataataacattatcggtgacttgatttgttaaa 10854473  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Original strand, 10854504 - 10854533
Alignment:
Q  194 aaaatcctccttgattcactaccttcttcc 223  Q
    ||||||||||||||||||||||||||||||    
T  10854504 aaaatcctccttgattcactaccttcttcc 10854533  T

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Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 9269730 - 9269548
Alignment:
Q  1 aataaactaatctaactacatacaatattccatattccagatttacaaacatattgataactatatctcatgaatctcttattttgtttcttcaattgcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  9269730 aataaactaatctaactacatacaatattccatattccagatttacaaacatattgataactatatctcatgaatctcttattttgtttctccgattgcc 9269631  T
Q  101 tgtgtttatcgatcaattgagttgtgtcggatagaattggggcttatgaaataataacattatcggtgagttgatttgttaaa 183  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||| |||||||||||||    
T  9269630 tgtgtttatcgatcaattgagttgtgtcggatagaattggagcttatgaaataataacatattcggtgacttgatttgttaaa 9269548  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 9269516 - 9269488
Alignment:
Q  195 aaatcctccttgattcactaccttcttcc 223  Q
    |||||||||||||||||||||||||||||    
T  9269516 aaatcctccttgattcactaccttcttcc 9269488  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 23733639 - 23733683
Alignment:
Q  29 tccatattccagatttacaaacatattgataactatatctcatga 73  Q
    ||||||||||| |||||||||| |||||||||||||||| |||||    
T  23733639 tccatattccaaatttacaaacttattgataactatatcacatga 23733683  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 23740831 - 23740875
Alignment:
Q  29 tccatattccagatttacaaacatattgataactatatctcatga 73  Q
    ||||||||||| |||||||||| |||||||||||||||| |||||    
T  23740831 tccatattccaaatttacaaacttattgataactatatcacatga 23740875  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 23616982 - 23617025
Alignment:
Q  29 tccatattccagatttacaaacatattgataactatatctcatg 72  Q
    ||||||||||| |||||||||| |||||||||||||||| ||||    
T  23616982 tccatattccaaatttacaaacttattgataactatatcacatg 23617025  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 23648323 - 23648366
Alignment:
Q  29 tccatattccagatttacaaacatattgataactatatctcatg 72  Q
    ||||||||||| |||||||||| |||||||||||||||| ||||    
T  23648323 tccatattccaaatttacaaacttattgataactatatcacatg 23648366  T

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