View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20148_high_54 (Length: 228)
Name: NF20148_high_54
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_high_54 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 56 - 212
Target Start/End: Original strand, 43416303 - 43416459
Alignment:
| Q |
56 |
ttataagagaatatgagtcaacaaaaattgatgtattcttctaaagaaaagcaaaagtcgacggttcttagcttcccaattgcatggccaattacatgca |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43416303 |
ttataagagaatatgagtcaacaaaaattgatgtattcttctaaagaaaagcaaaagtcgacggttcttagcttcccaattgcatggccaattacatgca |
43416402 |
T |
|
| Q |
156 |
acacctcctcaagtgctacattcttgaatannnnnnnactctagaaactgtagtaag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43416403 |
acacctcctcaagtgctacattcttgaatatttttttactctagaaactgtagtaag |
43416459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 43416238 - 43416283
Alignment:
| Q |
15 |
cacagacacgcatataacgctttcaatctgaaatgttagtgttata |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43416238 |
cacagacacgcatataacgctttcaatctgaaatgttagtgctata |
43416283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University