View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20148_high_7 (Length: 489)
Name: NF20148_high_7
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Complemental strand, 50408715 - 50408235
Alignment:
| Q |
18 |
attgtgattttttattctttttacaagtaatcatcattgttaatttactttaaacaagtaactaacaatttgctatatggtgccaaaccaagcacgtagc |
117 |
Q |
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| T |
50408715 |
attgtgattttttattctttttacaagtaatcatcattgttaatttactttaaacaagtaactaacaatttgctatatggtgccaaaccaagcacgtagc |
50408616 |
T |
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| Q |
118 |
tgagacagcaaaatgttgcacgcaagaaaatgccaaagttgaatacacaaaattcattcatgtatagccaaaattagatattataattgattccctatat |
217 |
Q |
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| T |
50408615 |
tgagacagcaaaatgttggacacaagaaaatgccaaagttgaatacacaaaattcattcatgtatagccaaaattagatattataattgattccctatat |
50408516 |
T |
|
| Q |
218 |
ttatcacatgattacagtgaaagatgggtattgaaaaagaaagcggtcctatactatagacacaaaaatggattgaa-ttgtttttcggttcctagtcat |
316 |
Q |
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| T |
50408515 |
ttatcacatgagtacagtgaaagatgggtattgaaaaagaaagcggtcctatactatagacacaaaaatggattgaatttttttttcggttcctagtcat |
50408416 |
T |
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| Q |
317 |
tgtcgtcctagtggtagtgaaatttgcttataaatcaacattgaaacaccaat----------caacattcaacattcaacccctatacatcaatg---- |
402 |
Q |
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| T |
50408415 |
tgtcgtcctagtggtagtgaaatttgcttataaatcaacattcaaacaccaatcaacattcaacaacattcaacattcaacccctatacatcaatgaatc |
50408316 |
T |
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| Q |
403 |
aatcacatcactgt------------ttcctttcctctcttgccgtcattttggaccaccgtcatctcagccgtagctcct |
471 |
Q |
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| T |
50408315 |
aatcacatcactgtagcttttgcttcttcctttcctctcttgccgtcattttggaccaccgtcatctcagccgtagctcct |
50408235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 471
Target Start/End: Original strand, 41637755 - 41637791
Alignment:
| Q |
435 |
gtcattttggaccaccgtcatctcagccgtagctcct |
471 |
Q |
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| T |
41637755 |
gtcattttggaccaccgtcatctcatccgaagctcct |
41637791 |
T |
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