View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20148_low_11 (Length: 453)
Name: NF20148_low_11
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 39318831 - 39319112
Alignment:
| Q |
1 |
caatcatcgaaccaagtcaacaaccttggatccatcctgcttcccaaatgcctccaacgactaaccaaggaccattcactctcaaacttcctaacgacac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
39318831 |
caatcatcgaaccaagtcaacaaccttggatccatcctgcttcccaaatgcctccaacgactaaccaaggaccgttcactctcaaacgtcctaacgacac |
39318930 |
T |
|
| Q |
101 |
ataatagacaaagatagacattgatggcacaccgcttcgtaaggttcccattcaaacaactaacaactcgaaaatcaagccttcctcacatatgtatgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
39318931 |
ataatagacaaagatagacattgatggcacaccgcttcgtaaggttcccattcaaacaactaacaactcgaaaatcaagccttcctcgcatatgtaagat |
39319030 |
T |
|
| Q |
201 |
gcacaaactctatcctaaaacctctcaatcatttactctctaactgacttgagtgtcaaaatgtttgcaggtacctctactgc |
283 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39319031 |
gcacaaactctatcctaaaacctctc-ttcatttactctctaactgacttgagtgtcaaagtgtttgcaggtacctctactgc |
39319112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 283 - 434
Target Start/End: Original strand, 39319148 - 39319299
Alignment:
| Q |
283 |
ctgatgagtccatatcaactttcaaacaaattatgtaatttaaaagtacacttccaaaagtccaaaactatgtagattttttccttcacttgagtttgaa |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39319148 |
ctgatgagtccatatcaactttcaaacaaattatgtaatttaaaagtacacttccaaaagtccaaaactatgtagattttttccttcacttgagtttgaa |
39319247 |
T |
|
| Q |
383 |
ttttagactgaattttatgtgacgttgtcacttggtctggtgacaaacaaga |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
39319248 |
ttttagactgaattttatgtgacgttgtcacttcgtcgggtgacaaacaaga |
39319299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University