View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20148_low_13 (Length: 447)
Name: NF20148_low_13
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Original strand, 10069015 - 10069415
Alignment:
| Q |
18 |
gatgctgccatcatcatggccactacaaccatagcaaaaaattgcttcatcttcaatgcttccatttctgaaaattttcttggaaattttgtttcttttc |
117 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10069015 |
gatgctgccatcatcatggccactaccagcatagcaaaaaattgcttcatcttcaatgcttccatttctgaaaattttcttggaaattttgtttcttttc |
10069114 |
T |
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| Q |
118 |
ttgcgaggaaagaaatcgagaaaagtggttaggcaaagacaaggataggtagtggatgaatattaagtgtatgtctatgtgactttatatagttgcaata |
217 |
Q |
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| T |
10069115 |
ttgcaaggaaagaaatcgagagaagtggttaggcaaagacaaggataggtagtggatgaatattaagtgtatgtctatgcgactttatatagttgcaata |
10069214 |
T |
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| Q |
218 |
gaggatgaaaataaaataaagcaaatttttgggattatttaatttctgatggccagcctgcctcaacttattgttttcgaggatttcaaggatgatgaca |
317 |
Q |
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| T |
10069215 |
gaggatgaaaataaaataaagcaaatttttgggattatttaatttttgatggccagcctgcctcaacttattgttttcgaggatttcaaggatgatgaca |
10069314 |
T |
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| Q |
318 |
attgtcttgttgatgagagaggaaataagttttggtggtttcattcttcttgtttttgagacgattaactaaacgcaacgcagatactcacatgcctctt |
417 |
Q |
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| T |
10069315 |
attgtcttgttgatgagagaggaaataagttttggtggtttcattcttcttgtttttgagacgattaactgaacgcaacgcagaaactcacatgcctctt |
10069414 |
T |
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| Q |
418 |
t |
418 |
Q |
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| T |
10069415 |
t |
10069415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 10106773 - 10106970
Alignment:
| Q |
18 |
gatgctgccatcatcatggccactacaaccatagcaaaaaattgcttcatcttcaatgcttccatttctg---aaaattttcttggaaattttgtttctt |
114 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||| ||| |||||||||||||| ||||||||| |||| |||||||||||| |||||| |
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| T |
10106773 |
gatgctgccatcatcatgaccactaccaccatagcaaaaatttgattcatcttcaatgcctccatttctataaaaaaaaaacttggaaattttctttctt |
10106872 |
T |
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| Q |
115 |
ttcttgcgaggaaagaaatcgagaaaagtggttaggcaaagacaaggataggtagtggatgaatattaagtgtatgtctatgtgactttatatagttg |
212 |
Q |
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| T |
10106873 |
ttcttttgaggaaagaaagtgagaggaatgggtaggcaaatacaaggataggtagtggatgaatattaagtgtatgtctatgtgactttatatagttg |
10106970 |
T |
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