View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20148_low_17 (Length: 414)

Name: NF20148_low_17
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20148_low_17
NF20148_low_17
[»] chr3 (2 HSPs)
chr3 (13-398)||(29594494-29594879)
chr3 (18-100)||(11353611-11353693)
[»] chr4 (4 HSPs)
chr4 (13-398)||(52077387-52077772)
chr4 (13-398)||(29058499-29058884)
chr4 (13-289)||(52088298-52088574)
chr4 (39-102)||(43898996-43899059)
[»] chr1 (1 HSPs)
chr1 (159-399)||(51288555-51288794)
[»] chr7 (2 HSPs)
chr7 (39-100)||(12142073-12142133)
chr7 (39-100)||(44539564-44539625)
[»] chr2 (1 HSPs)
chr2 (13-76)||(4564336-4564399)
[»] chr5 (1 HSPs)
chr5 (43-100)||(24153192-24153249)


Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 13 - 398
Target Start/End: Complemental strand, 29594879 - 29594494
Alignment:
Q  13 aatatgggatgtcaatgttaaataagaaaatagagggggtgtctgtgtcatttaaagagacctcaaggaagatgaatgtatttttcccaaacctctttaa 112  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29594879 aataggggaggtcaatgttaaataagaaaatagagggggtgtctgtgtcatttaaagagacctcaagggagatgaatgtatttttcccaaacctctttaa 29594780  T
Q  113 tgagaatgtgggaagcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaagatatgctctcttaaatttgtgtaatg 212  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  29594779 ttagaatgtgggaagcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaatatctgctctcttaaatttgtgtaatg 29594680  T
Q  213 caaaaccaatcctttgataaaattagtgtgattgaaaaagcttatcaaaaatcttacaaggtgttcaagatcaaactggtggtatattaatgttaatatc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29594679 caaaaccaatcctttgataaaattagtgtgattgaaaaagcttataaaaaatcttacaaggtgttcaagatcaaactggtggtatattaacgttaatatc 29594580  T
Q  313 tttgttattttagttttgtttgtgttcattgggatttttatcatcagaagctcttgcaaaacttatacacatatcagataaccttc 398  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29594579 tttgttattttagttttgtttgtgttcattgggatttttatcattagaagctcttgcaaaacttatacacatatcagataaccttc 29594494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 11353693 - 11353611
Alignment:
Q  18 gggatgtcaatgttaaataagaaaatagagggggtgtctgtgtcatttaaagagacctcaaggaagatgaatgtatttttccc 100  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||| || |||| |||||||||||    
T  11353693 gggaggtcattgttaaataagaaaatagagggggtgtctgtgtcatttaacgagaccttaagggaggtgaacgtatttttccc 11353611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 13 - 398
Target Start/End: Complemental strand, 52077772 - 52077387
Alignment:
Q  13 aatatgggatgtcaatgttaaataagaaaatagagggggtgtctgtgtcatttaaagagacctcaaggaagatgaatgtatttttcccaaacctctttaa 112  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  52077772 aataggggaggtcaatgttaaataagaaaatagagggggtgtctgtgtcttttaaagagacctcaagggagatgaatgtatttttcccaaacctctttaa 52077673  T
Q  113 tgagaatgtgggaagcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaagatatgctctcttaaatttgtgtaatg 212  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  52077672 ttagaatgtgggaagcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaatatctgctctcttaaatttgtgtaatg 52077573  T
Q  213 caaaaccaatcctttgataaaattagtgtgattgaaaaagcttatcaaaaatcttacaaggtgttcaagatcaaactggtggtatattaatgttaatatc 312  Q
    |||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52077572 caaaaccagtcatttgataaaattagtgtgattgaaaaagcttatgaaaaatcttacaaggtgttcaagatcaaactggtggtatattaatgttaatatc 52077473  T
Q  313 tttgttattttagttttgtttgtgttcattgggatttttatcatcagaagctcttgcaaaacttatacacatatcagataaccttc 398  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  52077472 tttgttattttagttttgtttgtgttcattgggatttttatcattagaagctcttgcaaaacttatacccatatcagataaccttc 52077387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 13 - 398
Target Start/End: Original strand, 29058499 - 29058884
Alignment:
Q  13 aatatgggatgtcaatgttaaataagaaaatagagggggtgtctgtgtcatttaaagagacctcaaggaagatgaatgtatttttcccaaacctctttaa 112  Q
    |||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||| |||||||||||| ||||||||| |||    
T  29058499 aataggggaggtcaatgttaaataagaaaatagtgggggtgtctgtgtcatttaaagagacctcaagagagattaatgtatttttctcaaacctctgtaa 29058598  T
Q  113 tgagaatgtgggaagcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaagatatgctctcttaaatttgtgtaatg 212  Q
    | ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29058599 ttagaatgtgggaagcttaaatattttcagatatgatgaaaccttgtaaataaaatagaagactgagttgcaagatctgctctcttaaatttgtgtaatg 29058698  T
Q  213 caaaaccaatcctttgataaaattagtgtgattgaaaaagcttatcaaaaatcttacaaggtgttcaagatcaaactggtggtatattaatgttaatatc 312  Q
    |||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  29058699 caaagccagtcctttgataaaattagtgtgattgaaaaagcttatgaaaaatcttacaaggtgttcaagatcaaactagtggtatattgatgttaatatc 29058798  T
Q  313 tttgttattttagttttgtttgtgttcattgggatttttatcatcagaagctcttgcaaaacttatacacatatcagataaccttc 398  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  29058799 tttgttattttagttttgtttgtgttcattgggatttttatcattagaagctcttgcaaaacttatacccatatcagataaccttc 29058884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 13 - 289
Target Start/End: Complemental strand, 52088574 - 52088298
Alignment:
Q  13 aatatgggatgtcaatgttaaataagaaaatagagggggtgtctgtgtcatttaaagagacctcaaggaagatgaatgtatttttcccaaacctctttaa 112  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  52088574 aataggggaggtcaatgttaaataagaaaatagagggggtgtctgtgtcgtttaaagagacctcaagggagatgaatgtatttttcccaaacctctttaa 52088475  T
Q  113 tgagaatgtgggaagcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaagatatgctctcttaaatttgtgtaatg 212  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  52088474 ttagaatgtgggaagcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaagacctgccctcttaaatttgtgtaatg 52088375  T
Q  213 caaaaccaatcctttgataaaattagtgtgattgaaaaagcttatcaaaaatcttacaaggtgttcaagatcaaact 289  Q
    |||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  52088374 caaaaccagtcatttgataaaattagtgtgattgaaaaagcttatgaaaaatcttacaaggtgttcaagatcaaact 52088298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 43898996 - 43899059
Alignment:
Q  39 aaaatagagggggtgtctgtgtcatttaaagagacctcaaggaagatgaatgtatttttcccaa 102  Q
    ||||||||||||||||  ||  ||||| |||||||||||||| |||||||| || |||||||||    
T  43898996 aaaatagagggggtgtgagttacatttcaagagacctcaagggagatgaatatagttttcccaa 43899059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 159 - 399
Target Start/End: Original strand, 51288555 - 51288794
Alignment:
Q  159 taaataaaatagaagactgagttgcaagatatgctctcttaaatttgtgtaatgcaaaaccaatcctttgataaaattagtgtgattgaaaaagcttatc 258  Q
    |||||||||||||| | |||||| |||  |  |||||||||||||||| | || |||||||| ||| || ||||| |||||||||||||||||||||||     
T  51288555 taaataaaatagaaaattgagtttcaaattccgctctcttaaatttgtatgatccaaaaccagtccctttataaa-ttagtgtgattgaaaaagcttatg 51288653  T
Q  259 aaaaatcttacaaggtgttcaagatcaaactggtggtatattaatgttaatatctttgttattttagttttgtttgtgttcattggga-tttttatcatc 357  Q
    |||||| |||||||||||| ||||||| || ||| | ||||| |||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||     
T  51288654 aaaaattttacaaggtgttaaagatcacaccggtag-atattgatgttagtatctttgctattttagttttgtttgtgttcagtgggattttttatcatt 51288752  T
Q  358 agaagctcttgcaaaacttatacacatatcagataaccttct 399  Q
    || ||||||||||||| |||||| ||||||||||||||||||    
T  51288753 aggagctcttgcaaaatttatacccatatcagataaccttct 51288794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 12142073 - 12142133
Alignment:
Q  39 aaaatagagggggtgtctgtgtcatttaaagagacctcaaggaagatgaatgtatttttccc 100  Q
    |||||||||||| |||| | |||||||||||||||||||||| |||||| ||||||||||||    
T  12142073 aaaatagagggg-tgtcggcgtcatttaaagagacctcaagggagatgagtgtatttttccc 12142133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 44539564 - 44539625
Alignment:
Q  39 aaaatagagggggtgtctgtgtcatttaaagagacctcaaggaagatgaatgtatttttccc 100  Q
    |||||||||||||||||| ||||||||||||| | |||| || || ||||||||||||||||    
T  44539564 aaaatagagggggtgtctctgtcatttaaagaaaactcaggggaggtgaatgtatttttccc 44539625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 4564399 - 4564336
Alignment:
Q  13 aatatgggatgtcaatgttaaataagaaaatagagggggtgtctgtgtcatttaaagagacctc 76  Q
    ||||||||| |||| ||||| |||| |||||||| ||||||| ||| | |||||||||||||||    
T  4564399 aatatgggaggtcattgttagataaaaaaatagaaggggtgtttgtattatttaaagagacctc 4564336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 24153249 - 24153192
Alignment:
Q  43 tagagggggtgtctgtgtcatttaaagagacctcaaggaagatgaatgtatttttccc 100  Q
    ||||| |||||||||| |||||| || |||||||||||||| ||| |||| |||||||    
T  24153249 tagagtgggtgtctgtctcattttaatagacctcaaggaaggtgagtgtaattttccc 24153192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University