View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20148_low_18 (Length: 406)
Name: NF20148_low_18
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 38 - 323
Target Start/End: Complemental strand, 8997438 - 8997153
Alignment:
| Q |
38 |
aataagtttccttgatttttactggtcaaaacaaccactgaacaaccttggaggatcttagtttacataggtagctgcaagtttcttctcatggggcatc |
137 |
Q |
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| T |
8997438 |
aataagtttccttgatttttactggtcaaaacaaccactgaacaaccttggaggatcttagtttatataggtagctgcaagtttcttctcatggggcatc |
8997339 |
T |
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| Q |
138 |
gatacggatactaacagaatatcccaattttgttttgaggtgtttaatttataacgaagctttttagtgtgaatgaaatttagcatcagtggttctaaat |
237 |
Q |
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| T |
8997338 |
gatacggatactaacagaatatcccaattttgttttgaggtgtttaatttataatgaagctttttagtgtgaatgaaatttagcatcagtggttctaaat |
8997239 |
T |
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| Q |
238 |
ttgctttctattcttttatgtatctatacttcttacaaagcatttgattgaaattccactgtgcggctccgattctggtgcatggc |
323 |
Q |
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| T |
8997238 |
ttgctttctattcttttatgtatctatacttcttacaaagcatttgattgaaattccactgtgcggctccgattctggtgcatggc |
8997153 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 317
Target Start/End: Complemental strand, 30873110 - 30873051
Alignment:
| Q |
259 |
atctatactt-cttacaaagcatttgattgaaattccactgtgcggctccgattctggtg |
317 |
Q |
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| T |
30873110 |
atctatactttcttacaaagcagctgattcatattccactgtgcggctccgattctggtg |
30873051 |
T |
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